Recovery plans for endangered southern resident killer whales Orcinus orca have identified reduced prey availability as a risk to the population. In order to better assess this risk, we studied prey selection from 2004 to 2008 in 2 regions of the whales' summer range: San Juan Islands, Washington and the western Strait of Juan de Fuca, British Columbia. Following the whales in a small boat, we collected fish scales and tissue remains from predation events, and feces, using a fine mesh net. Visual fish scale analysis and molecular genetic methods were used to identify the species consumed. Chinook salmon, a relatively rare species, was by far the most frequent prey item, confirming previous studies. For Chinook salmon prey, we used genetic identification methods to estimate the spawning region of origin. Of the Chinook salmon sampled, 80 to 90% were inferred to have originated from the Fraser River, and only 6 to 14% were inferred to have originated from Puget Sound area rivers. Within the Fraser River, the Upper Fraser, Middle Fraser, South Thompson River and Lower Fraser stocks were inferred to currently be sequentially important sources of Chinook salmon prey through the summer. This information will be of significant value in guiding management actions to recover the southern resident killer whale population.

Fall Chinook salmon Oncorhynchus tshawytscha in the Snake River basin were listed under the Endangered Species Act in 1992. At the time of listing, it was assumed that fall Chinook salmon juveniles in the Snake River basin adhered strictly to an ocean-type life history characterized by saltwater entry at age 0 and first-year wintering in the ocean. Research showed, however, that some fall Chinook salmon juveniles in the Snake River basin spent their first winter in a reservoir and resumed seaward movement the following spring at age 1 (hereafter, reservoir-type juveniles). We collected wild and hatchery ocean-type fall Chinook salmon juveniles in 1997 and wild and hatchery reservoir-type juveniles in 1998 to assess the condition of the reservoir-type juveniles at the onset of seaward movement. The ocean-type juveniles averaged 112-139 mm fork length, and the reservoir-type juveniles averaged 222-224 mm fork length. The large size of the reservoirtype juveniles suggested a high potential for survival to salt water and subsequent return to freshwater. Scale pattern analyses of the fall Chinook salmon spawners we collected during 1998-2003 supported this point. Of the spawners sampled, an overall average of 41% of the wild fish and 51% of the hatchery fish had been reservoir-type juveniles. Males that had been reservoirtype juveniles often returned as small ''minijacks'' (wild, 16% of total; hatchery, 40% of total), but 84% of the wild males, 60% of the hatchery males, and 100% of the wild and hatchery females that had been reservoir-type juveniles returned at ages and fork lengths commonly observed in populations of Chinook salmon. We conclude that fall Chinook salmon in the Snake River basin exhibit two alternative juvenile life histories, namely ocean-type and reservoir-type.

Understanding diet is critical for conservation of endangered predators. Southern Resident killer whales (SRKW) (Orcinus orca) are an endangered population occurring primarily along the outer coast and inland waters of Washington and British Columbia. Insufficient prey has been identified as a factor limiting their recovery, so a clear understanding of their seasonal diet is a high conservation priority. Previous studies have shown that their summer diet in inland waters consists primarily of Chinook salmon (Oncorhynchus tshawytscha), despite that species’ rarity compared to some other salmonids. During other times of the year, when occurrence patterns include other portions of their range, their diet remains largely unknown. To address this data gap, we collected feces and prey remains from October to May 2004–2017 in both the Salish Sea and outer coast waters. Using visual and genetic species identification for prey remains and genetic approaches for fecal samples, we characterized the diet of the SRKWs in fall, winter, and spring. Chinook salmon were identified as an important prey item year-round, averaging ~50% of their diet in the fall, increasing to 70–80% in the mid-winter/early spring, and increasing to nearly 100% in the spring. Other salmon species and non-salmonid fishes, also made substantial dietary contributions. The relatively high species diversity in winter suggested a possible lack of Chinook salmon, probably due to seasonally lower densities, based on SRKW’s proclivity to selectively consume this species in other seasons. A wide diversity of Chinook salmon stocks were consumed, many of which are also at risk. Although outer coast Chinook samples included 14 stocks, four rivers systems accounted for over 90% of samples, predominantly the Columbia River. Increasing the abundance of Chinook salmon stocks that inhabit the whales’ winter range may be an effective conservation strategy for this population.

We model age-specific growth rates of Chinook salmon (Oncorhynchus tshawytscha) with two life-history behaviors from Alaska (i. Situk and ii.Taku Rivers), Puget Sound, Washington (iii., iv. Skagit River), and California (v. Smith River) relative to oceanic conditions in those regions. By analyzing over 20 yr of biological and physical data from the NE Pacific downwelling, upwelling, and transition zones, we are able to determine the factors affecting growth across much of the species' range and between life-history behaviors. With scale increment data from returning fish, we use path analysis and partial least squares regression to quantify the relationships between growth and regional-and large-scale oceanic conditions (e.g., sea level height, sea surface temperature, upwelling). Alaskan fish with both ocean-and stream-type behaviors were fit best by the environmental data from the winter in Alaska waters. Specifically, coastal and gyre factors such as sea surface temperature, river flow, and Ekman pumping positively correlated to growth, indicating a productive and strong Alaska Current promoted growth. Growth of fish from California was fit by local factors such as increased upwelling, lower coastal sea surface temperature, and wind stresses during summer and spring, indicating a productive and strong California Current promoted growth. For Puget Sound, Washington, growth of fish that migrate to sea in their first year was generally negatively correlated to a strong California Current. Puget Sound fish that spend a year in freshwater before migrating to sea were modeled well with environmental data from their source region for the first 2 yr at sea and by data from Alaska waters in their third year at sea. Results suggest that conditions in which the transition zone is dominated by neither the Alaska nor California Currents are best for increased growth of Puget Sound fish.

Sound fisheries management depends on understanding life history characteristics, such as age at maturity, migration, and spawning history; hard parts, such as scales and otoliths, are commonly used to estimate values for these traits. Validation of these techniques is often difficult but critical because errors in mean values for a population can result in erroneous estimates of sustainable exploitation rates. In this study, we compared information on age and spawning history derived from genetic analysis with information from scale analysis for 1,836 individual steelhead Oncorhynchus mykiss representing two life history stages (smolt and mature adult); these fish were of hatchery and wild origin and were sampled from two rivers in Washington State over a period of 19 years. Aging error rates were less than 5% for both wild smolts and hatchery adults, but the error rate for wild adults was much higher (13%; 95% confidence interval [CI] = 1.82–29.22%). Adult scale ages were biased; scale readers typically overestimated the ages of younger fish and underestimated the ages of older fish. In addition to the errors in age estimation, repeat spawners were misclassified as virgin spawners 6.5% of the time (95% CI = 0.79–20.26%). The higher error rates obtained in using scales for aging and identifying repeat spawning in wild adults may partly stem from the more complex life history relative to that of smolts or hatchery‐origin adults; these results highlight the need for verification of scale analysis, especially for wild steelhead populations.