As an economic crop, pepper satisfies people's spicy taste and has medicinal uses worldwide. To gain a better understanding of Capsicum evolution, domestication, and specialization, we present here the genome sequence of the cultivated pepper Zunla-1 (C. annuum L.) and its wild progenitor Chiltepin (C. annuum var. glabriusculum). We estimate that the pepper genome expanded ∼0.3 Mya (with respect to the genome of other Solanaceae) by a rapid amplification of retrotransposons elements, resulting in a genome comprised of ∼81% repetitive sequences. Approximately 79% of 3.48-Gb scaffolds containing 34,476 protein-coding genes were anchored to chromosomes by a high-density genetic map. Comparison of cultivated and wild pepper genomes with 20 resequencing accessions revealed molecular footprints of artificial selection, providing us with a list of candidate domestication genes. We also found that dosage compensation effect of tandem duplication genes probably contributed to the pungent diversification in pepper. The Capsicum reference genome provides crucial information for the study of not only the evolution of the pepper genome but also, the Solanaceae family, and it will facilitate the establishment of more effective pepper breeding programs.de novo genome sequence | genome expansion | Solanaceae evolution

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Coastal hypoxia is an increasingly recognized environmental issue of global concern to both the scientific community and the general public. We assessed the relative contributions from marine and terrestrially sourced organic matter that were responsible for oxygen consumption in a well-studied seasonal coastal hypoxic zone, the East China Sea off the Changjiang Estuary. Our fieldwork was conducted in August 2011 during reinstatement of a subsurface hypoxia, when we observed a continuous decline of dissolved oxygen along with production of dissolved inorganic carbon resulting from organic carbon remineralization. On the basis of a three end-member mixing model and determinations of the stable isotopic compositions of dissolved inorganic carbon (δ13CDIC), the end product of particulate organic carbon (POC) degradation, we quantified the δ13C value of the remineralized organic carbon (δ13COCx), which was −18.5 ± 1.0‰. This isotopic composition was very similar to the δ13C of marine sourced POC produced in situ (−18.5 ± 0.3‰) rather than that of the terrestrially sourced POC (−24.4 ± 0.2‰). We concluded that marine-sourced organic matter, formed by eutrophication-induced marine primary production, was the dominant oxygen consumer in the subsurface hypoxic zone in the East China Sea off the Changjiang Estuary.

ABSTRACT:The ocean absorbs about 25% of anthropogenic CO 2 emissions, which alters its chemistry. Among the changes of the carbonate system are an increase in the partial pressure of CO 2 (pCO 2 ) and a decline of pH; hence, the whole process is often referred to as 'ocean acidification'. Many microbial processes can be affected either directly or indirectly via a cascade of effects through the response of non-microbial groups and/or through changes in seawater chemistry. We briefly review the current understanding of the impact of ocean acidification on microbial diversity and processes, and highlight the gaps that need to be addressed in future research. The focus is on Bacteria, Archaea, viruses and protistan grazers but also includes total primary production of phytoplankton as well as species composition of eukaryotic phytoplankton. Some species and communities exhibit increased primary production at elevated pCO 2 . In contrast to their heterocystous counterparts, nitrogen fixation by non-heterocystous cyanobacteria is stimulated by elevated pCO 2 . The experimental data on the response of prokaryotic production to ocean acidification are not consistent. Very few other microbial processes have been investigated at environmentally relevant pH levels. The potential for microbes to adapt to ocean acidification, at either the species level by genetic change or at the community level through the replacement of sensitive species or groups by non-or less sensitive ones, is completely unknown. Consequently, the impact of ocean acidification on keystone species and microbial diversity needs to be elucidated. Most experiments used a short-term perturbation approach by using cultured organisms; few were conducted in mesocosms and none in situ. There is likely a lot to be learned from observations in areas naturally enriched with CO 2 , such as vents, upwelling and near-shore areas.

SummaryTribbles homolog 3 (TRB3, also known as TRIB3, NIPK and SKIP3), a human homolog of Drosophila Tribbles, has been found to interact with a variety of signaling molecules to regulate diverse cellular functions. Here, we report that TRB3 is a novel SMAD3-interacting protein. Expression of exogenous TRB3 enhanced the transcriptional activity of SMAD3, whereas knocking down endogenous TRB3 reduced the transcriptional activity of SMAD3. The kinase-like domain (KD) of TRB3 was responsible for the interaction with SMAD3 and the regulation of SMAD3-mediated transcriptional activity. In addition, TGF-b1 stimulation or overexpression of SMAD3 enhanced the TRB3 promoter activity and expression, suggesting that there is a positive feedback loop between TRB3 and TGF-b-SMAD3 signaling. Mechanistically, TRB3 was found to trigger the degradation of SMAD ubiquitin regulatory factor 2 (Smurf2), which resulted in a decrease in the degradation of SMAD2 and phosphorylated SMAD3. Moreover, TRB3-SMAD3 interaction promoted the nuclear localization of SMAD3 because of the interaction of TRB3 with the MH2 domain of SMAD3. These effects of TRB3 were responsible for potentiating the SMAD3-mediated activity. Furthermore, knockdown of endogenous TRB3 expression inhibited the migration and invasion of tumor cells in vitro, which were associated with an increase in the expression of Ecadherin and a decrease in the expression of Twist-1 and Snail, two master regulators of epithelial-to-mesenchymal transition, suggesting a crucial role for TRB3 in maintaining the mesenchymal status of tumor cells. These results demonstrate that TRB3 acts as a novel SMAD3-interacting protein to participate in the positive regulation of TGF-b-SMAD-mediated cellular biological functions.

The present work investigates the capability of single-stranded DNA (ssDNA) in enhancing the intrinsic peroxidase-like activity of the g-C3N4 nanosheets (NSs). We found that ssDNA adsorbed on g-C3N4 NSs could improve the catalytic activity of the nanosheets. The maximum reaction rate of the H2O2-mediated TMB oxidation catalyzed by the ssDNA-NSs hybrid was at least 4 times faster than that obtained with unmodified NSs. The activity enhancement could be attributed to the strong interaction between TMB and ssDNA mediated by electrostatic attraction and aromatic stacking and by both the length and base composition of the ssDNA. The high catalytic activity of the ssDNA-NSs hybrid permitted sensitive colorimetric detection of exosomes if the aptamer against CD63, a surface marker of exosome, was employed in hybrid construction. The sensor recognized the differential expression of CD63 between the exosomes produced by a breast cancer cell line (MCF-7) and a control cell line (MCF-10A). Moreover, a similar trend was detected in the circulating exosomes isolated from the sera samples collected from breast cancer patients and healthy controls. Our work sheds lights on the possibility of using ssDNA to enhance the peroxidase-like activity of nanomaterials and demonstrates the high potential of the ssDNA-NSs hybrid in clinical diagnosis using liquid biopsy.

A new route to synthesize V-doped and V−N codoped titania nanocatalysts using a novel two-phase hydrothermal method applied in hazardous PCP−Na decomposition was reported. The physicochemical properties were characterized, indicating that the crystallite surface area increased after both first hydrothermal (FH) V impregnation and second hydrothermal (SH) N implantation, whereas mesoporous framework shrinkage and enlargement resulted from FH and SH, respectively. ICP and EPR demonstrated that SH did not alter V content, but rather it induced paramagnetic V4+ increase. The V species was enhanced from the inner to the catalyst surface with V5+ as the dominant mode and the N dopant existed with substitutional nitrogen as the main structure. The optical red shift by low vanadium implantation was ascribed to the V2p state, mainly from V4+ species in the matrix. After SH incorporation, the substitutional N1s state, interstitial N−O state, and concomitant NOx were responsible for the strong visible absorption of V−N−TiO2. The photodegradation rates of PCP−Na by the remodified catalysts after SH were much larger than that of the mono-V-TiO2 precursors fabricated in FH. SHNV02, SHNV05, and SHNV10 exhibited 2.4, 1.6, and 3.1 times promotion toward PCP−Na decomposition, respectively. Moreover, other variations and the synergetic effects after two-phase treatments were adequately discussed and proven to be useful in facilitating photocatalytic promotion. This work provided a strategy for obtaining further enhancement of the synthesized catalyst by second-step modification to achieve the deep removal effect of contaminants.

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