Flanking regulatory long terminal repeats (LTRs) in Human endogenous retrovirus (HERV) is a kind of typical DNA repeat that is widespread in the human genome. Currently, many algorithms have been developed to detect the latent periodicity of a wide range of DNA repeats. However, no such attempt was made for HERV LTRs. The present study focused on the investigation of the possible sequence periodic patterns in the HERV LTRs and their regulatory mechanisms. We calculated the sequence periods of 5', 3' and combined LTRs in HERVs with our devised matrix simulation algorithm. It is interesting that 5' and 3' LTRs have the same period of 7, and combined LTRs have a period of 9. These results indicated that HERV LTRs have predominant periodic patterns. Based on the obtained sequence periodicity, we constructed periodic consensus sequences of 5', 3' and combined LTRs. As to 5' and 3' LTRs with the same period - 7, we manually scanned the nucleotide bases in the corresponding positions of their periodic consensus sequences, and found some positions have the nucleotide base unchanged, such as the 1st, 5th and 7th positions. These conservative nucleotide base positions represent critical binding sites of regulatory LTRs, and may be indicative of conserved regulatory mechanisms in LRT-participating regulatory networks.
Pseudomaiestas gen. nov. with Pseudomaiestas dietrichi sp. nov. (type species, China: Yunnan Prov.), and Maiestas anhuiensis sp. nov. (China: Anhui Prov.) are described and illustrated. A checklist to the known genera and species of Deltocephalini from China is given together with a generic key. The tribe now holds 14 genera and 59 species in total from China. The genera Alobaldia Emeljanov, Amblysellus Sleesman, Ctenurella Vilbaste, Graminella DeLong, Matsumuratettix Metcalf, Peitouellus Vilbaste, Polyamia DeLong, Recilia Edwards, Wyushinamia Zhang & Duan, and Pseudomaiestas Xu, Shah & Duan gen. nov. contain 1 species. Similarly, Yuanamia Zhang & Duan includes 2 species, Paramesodes Ishihara contains 6 species, Deltocephalus Burmeister has 7 species, and Maiestas Distant is recorded with 34 species respectively. A separate key for the Chinese Maiestas species is also given.
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