Hereditary cases of breast and ovarian cancer are often attributed to germ-line mutations of the BRCA1 tumor suppressor gene. Although BRCA1 is involved in diverse cellular processes, its role in the maintenance of genomic integrity may be a key component of its tumor suppression activity. The protein encoded by BRCA1 interacts in vivo with the related BARD1 protein to form a heterodimeric complex that acts as a ubiquitin E3 ligase. Because the enzymatic activity of the BRCA1/BARD1 heterodimer is conserved over a broad phylogenetic range, it is thought to be critical for the central functions of BRCA1. To test this hypothesis, we have generated isogenic clones of embryonic stem cells that do or do not express an enzymatically proficient Brca1 polypeptide. Surprisingly, cells lacking the ubiquitin ligase activity of BRCA1 are viable and do not accumulate spontaneous cytogenetic rearrangements. Gene targeting efficiencies are modestly reduced in these cells, and chromosomal rearrangements arise at elevated rates in response to genotoxic stress. Nonetheless, cells lacking Brca1 enzymatic activity are not hypersensitive to the DNA cross-linking agent mitomycin C. They also form Rad51 focus in response to ionizing radiation and repair chromosome breaks by homologous recombination at wild-type levels. These results indicate that key aspects of BRCA1 function in genome maintenance, including its role in homologydirected repair of double-strand DNA breaks, do not depend on the E3 ligase activity of BRCA1.breast cancer ͉ BRCA1/BARD1 heterodimer ͉ E3 ubiquitin ligase ͉ homologous recombination ͉ DNA double-strand break repair F amilial susceptibility to breast and ovarian cancer is often mediated by germ-line mutations of the BRCA1 tumor suppressor gene (1). Because BRCA1 has been implicated in a broad range of cellular processes, it has an especially important role in the maintenance of genome integrity (2, 3), and studies of genetically engineered mice support a direct role for Brca1 in preserving chromosome stability (4). Indeed, murine ES cells and mouse embryonic fibroblasts (MEFs) with homozygous Brca1 mutations readily accumulate extensive cytogenetic lesions (5, 6). Also, BRCA1 is required for homology-directed repair (HDR) (5, 7, 8), a process that allows for error-free repair of double-stranded DNA breaks (DSBs). In accord with these findings, BRCA1 associates with proteins that mediate DSB repair, such as Rad51, CtIP, and the RAD50/MRE11/NBS1 complex, and is phosphorylated by protein kinases that regulate the cellular response to genotoxic stress, including ATM, ATR, and Chk2/Cds1 (2, 3). As such, a deficiency in DSB repair may contribute to the chromosomal instability characteristic of BRCA1 mutant cells.In vivo, most BRCA1 polypeptides exist as a heterodimeric complex with the related BARD1 protein (9, 10). Both proteins harbor an N-terminal RING domain, an motif required for the enzymatic function of many E3 ubiquitin ligases (11). Although the individual BRCA1 and BARD1 polypeptides display modest E3 ligase...