Background
Gastric cancer (GC) is a leading cause of cancer deaths, and an increased number of GC patients adopt to next-generation sequencing (NGS) to identify tumor genomic alterations for precision medicine.
Methods
In this study, we established a hybridization capture-based NGS panel including 612 cancer-associated genes, and collected sequencing data of tumors and matched bloods from 153 gastric cancer patients. We performed comprehensive analysis of these sequencing and clinical data.
Results
35 significantly mutated genes were identified such as
TP53
,
AKAP9
,
DRD2
,
PTEN
,
CDH1
,
LRP2
et al. Among them, 29 genes were novel significantly mutated genes compared with TCGA study.
TP53
is the top frequently mutated gene, and tends to mutate in male (p = 0.025) patients and patients whose tumor located in cardia (p = 0.011). High tumor mutation burden (TMB) gathered in
TP53
wild-type tumors (p = 0.045). TMB was also significantly associated with DNA damage repair (DDR) genes genotype (p = 0.047), Lauren classification (p = 1.5e−5), differentiation (1.9e−7), and HER2 status (p = 0.023). 38.31% of gastric cancer patients harbored at least one actionable alteration according to OncoKB database.
Conclusions
We drew a comprehensive mutational landscape of 153 gastric tumors and demonstrated utility of target next-generation sequencing to guide clinical management.
Electronic supplementary material
The online version of this article (10.1186/s12967-019-1941-0) contains supplementary material, which is available to authorized users.
Summary Sialic acid (SA) is an important nutrient but few studies have examined the link between dietary intake and breast milk sialic acid. The purpose of this observational study was to assess the potential relationship between human breast milk sialic acid levels and dietary nutrition intake 40 d postpartum. The study population included 90 healthy women who were lactating. Human breast milk SA concentrations were measured using fluorescence detector-high performance liquid chromatography (HPLC-FLD) analysis and nutritional intake was estimated by a computerized validated food frequency questionnaire. SA in human breast milk was bound to free oligosaccharides (82.35%), protein (15.27%) and free sialic acid (2.37%). The findings of this study indicate that subjects with higher milk SA levels showed statistically higher levels of vitamin A compared with subjects with lower SA levels (423.486172.29 vs 602.226126.46 mg/d, p50.000). In addition, there was a certain association (standardized coefficients50.713; p50.000) between breast milk SA and vitamin A intake in healthy young subjects. This study demonstrated that dietary vitamin A intake has a certain relationship with breast milk SA concentrations. This may be attributed to the influence of vitamin A on sialic acid glycoprotein and sialic acid mucopolysaccharide in the human body or the common food sources for vitamin A and sialic acid. Additional study is required to further investigate this relationship.
Abstract-In many mission critical applications of mobile robotic sensor networks (MRSN) the inter-sensor collaboration requires reliable application-level coordination based on strong network connectivity with some suggested solutions. In practice, however, the disturbing obstacles and harsh interferences the connectivity of the MRSN can be easily compromised especially when the failure of some critical sensors results in disintegration of the network into two or more disjoint segments. Existing connectivity restoration schemes fail to perform under such harsh working conditions as they overlook an important fact that sensors may encounter obstacles during the relocation. Our
Obstacle-avoiding Connectivity Restoration Strategy (OCRS) proposed method addresses this problem using a fully exploring mobility technique avoiding any incoming convex obstacle conditions. For which a Backup Selection Algorithm (BSA) proactively determine the cut-vertex sensors within the network and assigns a backup sensor to each cut-vertex node. Then a selected backup sensor avoiding obstacles uses a gyroscopic force controller displaced restoring the disturbed connectivity.Extensive simulation experiments verify OCRS capability to restore connectivity with guaranteed collision avoidance, and also to outperform contemporary schemes in terms of message complexity and travelling distance.
SummaryAn efficient partial 5-step synthesis of 4′-O-methylquercetin from quercetin in 63% yield is reported. This strategy relies on the selective protection of the catechol group with dichlorodiphenylmethane in diphenyl ether as solvent and on the selective protection of the hydroxyl groups at positions 3 and 7 with chloromethyl ether.
A solid amino‐supported palladium catalyst is used in an oxidative domino reaction for the diastereoselective construction of alkyne‐substituted cyclopentenol compounds. This heterogeneous catalyst exhibits high efficiency and excellent chemoselectivity, as well as good recyclability. The chemoselectivity of the domino reactions was readily controlled by switching the solvent and catalyst. Asymmetric syntheses and an oxidative carbocyclization‐borylation reaction have also been developed based on the heterogeneous palladium catalyst.
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