Background
Three-dimensional T1 magnetization prepared rapid acquisition gradient echo (3D-T1-MPRAGE) is preferred in detecting brain metastases (BM) among MRI. We developed an automatic deep learning–based detection and segmentation method for BM (named BMDS net) on 3D-T1-MPRAGE images and evaluated its performance.
Methods
The BMDS net is a cascaded 3D fully convolution network (FCN) to automatically detect and segment BM. In total, 1652 patients with 3D-T1-MPRAGE images from 3 hospitals (n = 1201, 231, and 220, respectively) were retrospectively included. Manual segmentations were obtained by a neuroradiologist and a radiation oncologist in a consensus reading in 3D-T1-MPRAGE images. Sensitivity, specificity, and dice ratio of the segmentation were evaluated. Specificity and sensitivity measure the fractions of relevant segmented voxels. Dice ratio was used to quantitatively measure the overlap between automatic and manual segmentation results. Paired samples t-tests and analysis of variance were employed for statistical analysis.
Results
The BMDS net can detect all BM, providing a detection result with an accuracy of 100%. Automatic segmentations correlated strongly with manual segmentations through 4-fold cross-validation of the dataset with 1201 patients: the sensitivity was 0.96 ± 0.03 (range, 0.84–0.99), the specificity was 0.99 ± 0.0002 (range, 0.99–1.00), and the dice ratio was 0.85 ± 0.08 (range, 0.62–0.95) for total tumor volume. Similar performances on the other 2 datasets also demonstrate the robustness of BMDS net in correctly detecting and segmenting BM in various settings.
Conclusions
The BMDS net yields accurate detection and segmentation of BM automatically and could assist stereotactic radiotherapy management for diagnosis, therapy planning, and follow-up.
This study develops tomato disease detection methods based on deep convolutional neural networks and object detection models. Two different models, Faster R-CNN and Mask R-CNN, are used in these methods, where Faster R-CNN is used to identify the types of tomato diseases and Mask R-CNN is used to detect and segment the locations and shapes of the infected areas. To select the model that best fits the tomato disease detection task, four different deep convolutional neural networks are combined with the two object detection models. Data are collected from the Internet and the dataset is divided into a training set, a validation set, and a test set used in the experiments. The experimental results show that the proposed models can accurately and quickly identify the eleven tomato disease types and segment the locations and shapes of the infected areas.
A new clustering membrane system using a complex chained P system (CCP) based on evolutionary mechanism is designed, developed, implemented, and tested. The purpose of CCP is to solve clustering problems. In CCP, two kinds of evolution rules in different chained membranes are used to enhance the global search ability. The first kind of evolution rules using traditional and modified particle swarm optimization (PSO) clustering techniques are used to evolve the objects. Another based on differential evolution (DE) is introduced to further improve the global search ability. The communication rules are adopted to accelerate the convergence and avoid prematurity. Under the control of evolution-communication mechanism, the CCP can effectively search for the optimal partitioning and improve the clustering performance with the help of the distributed parallel computing model. This proposed CCP is compared with four existing PSO clustering approaches on eight real-life datasets to verify the validity. The computational results on tested images also clearly show the effectiveness of CCP in solving image segmentation problems.
A new method using collective responses of starling birds is developed to enhance the global search performance of standard particle swarm optimization (PSO). The method is named chaotic starling particle swarm optimization (CSPSO). In CSPSO, the inertia weight is adjusted using a nonlinear decreasing approach and the acceleration coefficients are adjusted using a chaotic logistic mapping strategy to avoid prematurity of the search process. A dynamic disturbance term (DDT) is used in velocity updating to enhance convergence of the algorithm. A local search method inspired by the behavior of starling birds utilizing the information of the nearest neighbors is used to determine a new collective position and a new collective velocity for selected particles. Two particle selection methods, Euclidean distance and fitness function, are adopted to ensure the overall convergence of the search process. Experimental results on benchmark function optimization and classic clustering problems verified the effectiveness of this proposed CSPSO algorithm.
Accurate segmentation of choroidal neovascularization (CNV) patterns is vital for precise lesion size quantification in age-related macular degeneration. In this paper, we develop a method for unsupervised and parallel segmentation of CNV in optical coherence tomography based on a grid tissuelike membrane (GTM) system. A GTM system incorporates a modified Clustering In QUEst (CLIQUE) algorithm into tissue-like membrane systems. Exploiting CLIQUE's aptitude for unsupervised clustering, GTM systems can detect CNV of different shapes, positions and density without the need of a training stage. The average dice ratio is 0.84±0.04, outperforms both baseline and the state-of-the-art methods. Besides, being a parallel computational paradigm, GTM systems can handle all scans under analysis simultaneously and therefore they are less time consuming, completing CNV detection on 48 scans in 0.56 seconds.
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