In internally fertilizing organisms, mating involves a series of highly coordinated molecular interactions between the sexes that occur within the female reproductive tract. In species where females mate multiply, traits involved in postcopulatory interactions are expected to evolve rapidly, potentially leading to postmatingprezygotic (PMPZ) reproductive isolation between diverging populations. Here, we investigate the postmating transcriptional response of the lower reproductive tract of Drosophila mojavensis females following copulation with either conspecific or heterospecific (Drosophila arizonae) males at three time points postmating. Relatively few genes (15 total) were differentially regulated in the female lower reproductive tract in response to conspecific mating. Heterospecifically mated females exhibited significant perturbations in the expression of the majority of these genes, and also down-regulated transcription of a number of others, including several involved in mitochondrial function. These striking regulatory differences indicate failed postcopulatory molecular interactions between the sexes consistent with the strong PMPZ isolation observed for this cross. We also report the transfer of male accessory-gland protein (Acp) transcripts from males to females during copulation, a finding with potentially broad implications for understanding postcopulatory molecular interactions between the sexes.n internally fertilizing organisms, the female reproductive tract serves as the arena for a series of highly coevolved molecular interactions between the sexes that are critical for successful reproduction (1, 2). Postcopulatory interactions should further increase in complexity in species in which females mate with more than one male, as intense sexual selection propels the rapid evolution of traits mediating female choice, male competitive ability, and sexual conflict (3,4). This, in turn, may facilitate divergence of such traits between populations following different coevolutionary trajectories, leading to postmating-prezygotic (PMPZ) reproductive isolation (5). Consistent with these expectations are the rapid evolution of morphological and molecular reproductive traits associated with postcopulatory processes (6) and the recognition that PMPZ barriers can serve as potent and rapidly evolving forms of reproductive isolation (5).The availability of genomic resources for an increasing number of species provides a platform for elucidating the molecular basis of postcopulatory molecular interactions between males and females. For example, recent genomic studies on Drosophila melanogaster (7-14), Anopheles gambiae (15), and Apis mellifera (16, 17) have begun to characterize the female postmating response by identifying changes in the transcriptome and/or proteome of mated females. In D. melanogaster, sperm or other specific components of the seminal fluid are known to induce some of these changes, which ultimately trigger physiological responses in females (18). Male accessory-gland proteins (Acps), in part...

Although the importance of host plant chemistry in plant-insect interactions is widely accepted, the genetic basis of adaptation to host plants is not well understood. Here, we investigate transcriptional changes associated with a host plant shift in Drosophila mettleri. While D. mettleri is distributed mainly throughout the Sonoran Desert where it specializes on columnar cacti (Carnegiea gigantea and Pachycereus pringleii), a population on Santa Catalina Island has shifted to chemically divergent coastal prickly pear cactus (Opuntia littoralis). We compared gene expression of larvae from the Sonoran Desert and Santa Catalina Island when reared on saguaro (C. gigantea), coastal prickly pear and laboratory food. Consistent with expectations based on the complexity and toxicity of cactus relative to laboratory food, within-population comparisons between larvae reared on these food sources revealed transcriptional differences in detoxification and other metabolic pathways. The majority of transcriptional differences between populations on the cactus hosts were independent of the rearing environment and included a disproportionate number of genes involved in processes relevant to host plant adaptation (e.g. detoxification, central metabolism and chemosensory pathways). Comparisons of transcriptional reaction norms between the two populations revealed extensive shared plasticity that likely allowed colonization of coastal prickly pear on Santa Catalina Island. We also found that while plasticity may have facilitated subsequent adaptive divergence in gene expression between populations, the majority of genes that differed in expression on the novel host were not transcriptionally plastic in the presumed ancestral state.

One of the fundamental goals in evolution and ecology is to identify the genetic basis of adaptive phenotypes. Unfortunately, progress towards this goal has been hampered by a lack of genetic tools available for nonmodel organisms. The exciting new development of the CRISPR (clustered regularly interspaced short palindromic repeat)/Cas9 (CRISPR-associated nuclease 9) genome-editing system now promises to transform the field of molecular ecology by providing a versatile toolkit for manipulating the gen-ome of a wide variety of organisms. Here, we review the numerous applications of this groundbreaking technology and provide a practical guide to the creation of genetic knockouts, transgenics and other related forms of gene manipulation in nonmodel organisms. We also specifically discuss the potential uses of the CRISPR/Cas9 system in ecological and evolutionary studies, which will further advance the field towards the long-standing goal of connecting genotypes, phenotypes and fitness. Cas9 system to date have not been performed in an explicit ecological context, we will review case studies, often from traditional model organisms, that demonstrate different applications of the technology that could be used in ecology and evolution. Drawing from these studies and our own experiences, we will highlight some of the considerations and challenges associated with the application of CRISPR/Cas9 to nonmodel organisms, along with potential strategies to circumvent these issues.

Genetic theory predicts that workers in monogynous ant colonies with singly-mated queens should capitalize on higher relatedness with sisters than with brothers by altering the sex investment ratio of a colony in favor of females. Sex investment ratios, however, may also be influenced by the amount of resources available to colonies, in part because more mating opportunities might be obtained by investing scarce resources in males, which are much smaller than queens. Female larvae that reach a critical size by a particular point in development become queens while underfed larvae develop into workers, so workers could potentially influence the sex investment ratio of a colony by selectively feeding female larvae. In a previous experiment on the ant, Aphaenogaster rudis, colonies increased female sex investment after their diet was supplemented with elaiosomes, a lipid-rich food gained from a seed dispersal mutualism. In order to investigate the mechanisms producing this shift, we radio-labeled Sanguinaria canadensis elaiosomes with fatty acids and compared uptake among castes within a colony. The experiment was performed in both the laboratory and field. Lab colonies produced female-biased sex investment ratios, while field colonies mainly invested in males. We hypothesize that this discrepancy is related to differing levels of background food availability in the lab and field. The results of the elaiosome distribution experiment do not support a hypothesis that elaiosomes play a qualitative role in queen determination, because all individuals in a colony receive this nutrient. There is, however, support for the hypothesis that elaiosomes have a quantitative effect on larval development because larvae that accumulated more radio-label from elaiosomes tended to develop into gynes (virgin queens), while other female larvae developed into workers.

Facultative joint colony founding by social insects (pleometrosis) provides an outstanding opportunity to analyze the costs and benefits of sociality. Pleometrosis has been documented for a range of social insects, but most studies on the adaptive benefits of this behavior are restricted to the Hymenoptera. In this study, we provide the first analysis of costs and benefits associated with pleometrosis for Australian Dunatothrips, which form domiciles by glueing together phyllodes (leaves) of their Acacia host plant. In Dunatothrips aneurae, the distribution of foundress numbers per nest indicated that females formed associations non-randomly. Furthermore, average group size was independent of both the number of foundresses on the host plant and the number of mature colonies, suggesting that this behavior was not simply a response to limited availability of nesting sites. Although per capita reproduction declined with increasing group size, we also identified two benefits of pleometrosis: (1) individual foundresses in groups had higher survival than solitary foundresses during the brood development period, and (2) larger colony sizes resulting from pleometrosis provided a benefit later in colony development, because a higher proportion of D. aneurae adults survived invasions by the kleptoparasite Xaniothrips mulga when colony size was larger. These results demonstrate that the reproductive costs of pleometrosis are at least partially counterbalanced by survival benefits.

Facultative joint colony founding by social insects provides opportunities to analyze the roles of genetic and ecological factors in the evolution of cooperation. Although cooperative nesting is observed in range of social insect taxa, the most detailed studies of this behavior have been conducted with Hymenoptera (ants, bees, and wasps). Here, we show that foundress associations in the haplodiploid social thrips (Insecta: Thysanoptera) are most often comprised of close relatives (sisters), though groups with unrelated foundresses are also found. Associations among relatives appear to be facilitated by limited female dispersal, which results in viscous population structure. In addition, we found that per capita productivity declined with increasing group size, sex ratios were female-biased, and some female offspring apparently remained in their natal domicile for some time following eclosion. thus exhibits a suite of similarities with eusocial Hymenoptera, providing evidence for the convergent evolution of associated social and life-history traits in Hymenoptera and Thysanoptera.

Understanding the genetic basis of adaptation is one of the primary goals of evolutionary biology. The evolution of xenobiotic resistance in insects has proven to be an especially suitable arena for studying the genetics of adaptation, and resistant phenotypes are known to result from both coding and regulatory changes. In this study, we examine the evolutionary history and population genetics of two Drosophila mettleri cytochrome P450 genes that are putatively involved in the detoxification of alkaloids present in two of its cactus hosts: saguaro (Carnegiea gigantea) and senita (Lophocereus schottii). Previous studies demonstrated that Cyp28A1 was highly up-regulated following exposure to rotting senita tissue while Cyp4D10 was highly up-regulated following exposure to rotting saguaro tissue. Here, we show that a subset of sites in Cyp28A1 experienced adaptive evolution specifically in the D. mettleri lineage. Moreover, neutrality tests in several populations were also consistent with a history of selection on Cyp28A1. In contrast, we did not find evidence for positive selection on Cyp4D10, although this certainly does not preclude its involvement in host plant use. A surprising result that emerged from our population genetic analyses was the presence of significant genetic differentiation between flies collected from different host plant species (saguaro and senita) at Organ Pipe National Monument, Arizona, USA. This preliminary evidence suggests that D. mettleri may have evolved into distinctive host races that specialize on different hosts, a possibility that warrants further investigation.

The literature on sex ratio evolution in ant colonies is dominated by inclusive fitness arguments. In general, genetic theory makes good predictions about sexual investment in ant populations, but understanding colony-level variance in sex investment ratios has proven more difficult. Recently, however, more studies have addressed ecological factors that influence colony-level sex investment ratios. Food availability, in particular, has been manipulated because larval nutrition influences female caste determination, thus implying that resource availability should be of critical importance for colony sex investment ratios. However, results from food supplementation experiments are equivocal, and it is clear that ant colony response to food supplementation is dependent on the ecological background of the population. We presented field colonies of the ant Myrmica brevispinosa with two food types (proteins and carbohydrates), and assessed their relative impact on colony-level sex investment ratios. We show that colonies receiving carbohydrate enhancement invested in more female sexuals and produced more female-biased sex allocation ratios than protein-fed or control colonies. Thus, our study is the first, to our knowledge, to demonstrate that sex ratios in social insect colonies might be sensitive to resource quality. Male investment was not influenced by food treatment, but was positively correlated with colony size. Therefore, the shift in sex ratios in our study must have been mediated through nutritional influences on female caste determination rather than male brood elimination. We also used our data to evaluate evidence for sex ratio compensation by queenright colonies in response to male production by workers from orphaned colonies.