Abstract. The Rhône River is the largest source of terrestrial organic and inorganic carbon for the Mediterranean Sea. A large fraction of this terrestrial carbon is either buried or mineralized in the sediments close to the river mouth. This mineralization follows aerobic and anaerobic pathways, with a range of impacts on calcium carbonate precipitation and dissolution in the sediment near the sediment-water interface. This study focuses on the production of dissolved inorganic carbon (DIC) and total alkalinity (TA) by early diagenesis, consequential pH variations and the effect on calcium carbonate precipitation or dissolution. The sediment porewater chemistry was investigated along a transect from the Rhône River outlet to the continental shelf. TA and concentrations of DIC, SO 2− 4 and Ca 2+ were analyzed on bottom waters and extracted sediment porewaters, whereas pH and oxygen concentrations were measured in situ using microelectrodes. The average oxygen penetration depth into the sediment was 1.7 ± 0.4 mm close to the river mouth and 8.2 ± 2.6 mm in the continental shelf sediments, indicating intense respiration rates. Diffusive oxygen fluxes through the sediment-water interface ranged between 3 and 13 mmol O 2 m −2 d −1 . In the first 30 cm of the sediment, TA and DIC porewater concentrations increased with depth up to 48 mmol L −1 near the river outlet and up to 7 mmol L −1 on the shelf as a result of aerobic and anaerobic mineralization processes. Due to aerobic processes, at all stations pH decreased by 0.6 pH units in the oxic layer of the sediment accompanied by a decrease of the saturation state regarding calcium carbonate. In the anoxic layer of the sediments, sulfate reduction was the dominant mineralization process and was associated with an increase of porewater saturation state regarding calcium carbonate.Ultimately anoxic mineralization of organic matter caused calcium carbonate precipitation demonstrated by a large decrease in Ca 2+ concentration with depth in the sediment. Carbonate precipitation decreased in the offshore direction, together with the carbon turnover and sulfate consumption in the sediments. The large production of porewater alkalinity characterizes these sediments as an alkalinity source to the water column, which may increase the CO 2 buffering capacity of these coastal waters. Estuarine sediments should therefore receive more attention in future estimations of global carbon fluxes.