The whale shark is an ideal flagship species for 'citizen science' projects because of its charismatic nature, regular presence at numerous coastal aggregation sites and a growing number of ecotourism ventures focusing on the species. An online database of Whale Shark encounters, identifying individuals based on their unique skin patterning from 1992 to 2014 captured almost 30,000 whale shark encounter reports, comprising more than 6000 individuals identified from 54 countries. In this time the number of known whale shark aggregation sites increased from 13 to 20. Examination of encounters revealed a skewed sexratio bias towards males (overall >66%), high site fidelity amongst individuals with limited movements of sharks between neighbouring countries/regions but no records confirming 2 large, ocean basin-scale migrations. Citizen science has been vital in amassing large spatial and temporal datasets to elucidate key aspects of whale shark life-history and demographics and will continue to provide substantial long-term value.
Whale shark Rhincodon typus is a globally distributed species, but there is a lack of knowledge pertaining to their biology, seasonal occurrence, and distribution in the northern Gulf of Mexico (NGOM). Understanding critical habitat for whale sharks is essential on both a regional and global basis for proper management because of their large migratory range. The goal of the present study was to describe the regional distribution of whale shark feeding aggregations in the NGOM by exploiting a presence-only dataset collected as a part of a volunteer sighting survey. Whale shark aggregations have been documented in large numbers in the NGOM since 2003, and species distribution models provide a unique approach to analyzing these presence data. We used maximum entropy and ecological niche factor analysis, 2 algorithms designed for predicting species distribution based only on presence data, to analyze data for the summer period in 2008 and 2009. Cohen's kappa (kappa) and the 'area under the receiver operating characteristic curve' (AUC) were used to evaluate model performance with an external testing dataset. Kappa values ranged from 0.28 to 0.69, and AUC values ranged from 0.73 to 0.80, indicating that the predicted distribution had a fair to substantial agreement with the testing data. Distance to continental shelf edge, distance to adjacent petroleum platforms, and chlorophyll a were the variables most strongly related to whale shark sightings, likely due to an association of these variables with high food availability. Suitable habitat was predicted along the continental shelf edge, with the most suitable habitat predicted south of the Mississippi River Delta. The spatial distribution of suitable habitat is dynamic; therefore, a multi-year study is underway to better delineate temporal trends in regional whale shark distribution and to identify consistent areas of high suitability. Presenceonly habitat models are a powerful tool for delineating important regional habitat for a vulnerable, highly migratory species.
Alternative DNA structure-forming sequences can stimulate mutagenesis and are enriched at mutation hotspots in human cancer genomes, implicating them in disease etiology. However, the mechanisms involved are not well characterized. Here, we discover that Z-DNA is mutagenic in yeast as well as human cells, and that the nucleotide excision repair complex, Rad10-Rad1(ERCC1-XPF), and the mismatch repair complex, Msh2-Msh3, are required for Z-DNA-induced genetic instability in yeast and human cells. Both ERCC1-XPF and MSH2-MSH3 bind to Z-DNA-forming sequences, though ERCC1-XPF recruitment to Z-DNA is dependent on MSH2-MSH3. Moreover, ERCC1-XPF − dependent DNA strand-breaks occur near the Z-DNA-forming region in human cell extracts, and we model these interactions at the submolecular level. We propose a relationship in which these complexes recognize and process Z-DNA in eukaryotes, representing a mechanism of Z-DNA-induced genomic instability.
The timing and extent of international crossings by billfishes, tunas, and sharks in the Cuba-Mexico-United States (U.S.) triangle was investigated using electronic tagging data from eight species that resulted in >22,000 tracking days. Transnational movements of these highly mobile marine predators were pronounced with varying levels of bi- or tri-national population connectivity displayed by each species. Billfishes and tunas moved throughout the Gulf of Mexico and all species investigated (blue marlin, white marlin, Atlantic bluefin tuna, yellowfin tuna) frequently crossed international boundaries and entered the territorial waters of Cuba and/or Mexico. Certain sharks (tiger shark, scalloped hammerhead) displayed prolonged periods of residency in U.S. waters with more limited displacements, while whale sharks and to a lesser degree shortfin mako moved through multiple jurisdictions. The spatial extent of associated movements was generally associated with their differential use of coastal and open ocean pelagic ecosystems. Species with the majority of daily positions in oceanic waters off the continental shelf showed the greatest tendency for transnational movements and typically traveled farther from initial tagging locations. Several species converged on a common seasonal movement pattern between territorial waters of the U.S. (summer) and Mexico (winter).
SUMMARYSequences with the capacity to adopt alternative DNA structures have been implicated in cancer etiology; however, the mechanisms are unclear. For example, H-DNA-forming sequences within oncogenes have been shown to stimulate genetic instability in mammals. Here, we report that H-DNA-forming sequences are enriched at translocation breakpoints in human cancer genomes, further implicating them in cancer etiology. H-DNA-induced mutations were suppressed in human cells deficient in the nucleotide excision repair nucleases, ERCC1-XPF and XPG, but were stimulated in cells deficient in FEN1, a replication-related endonuclease. Further, we found that these nucleases cleaved H-DNA conformations, and the interactions of modeled H-DNA with ERCC1-XPF, XPG, and FEN1 proteins were explored at the sub-molecular level. The results suggest mechanisms of genetic instability triggered by H-DNA through distinct structure-specific, cleavage-based replication-independent and replication-dependent pathways, providing critical evidence for a role of the DNA structure itself in the etiology of cancer and other human diseases.
The predictable occurrence of whale sharks, Rhincodon typus, has been well documented in several areas. However, information relating to their migratory patterns, residency times and connectivity across broad spatial scales is limited. In the present study photo-identification data is used to describe whale shark population structure and connectivity among known aggregation sites within the Western Central Atlantic Ocean (WCA). From 1999 to 2015, 1,361 individuals were identified from four distinct areas: the Yucatan Peninsula, Mexico (n = 1,115); Honduras (n = 146); northern Gulf of Mexico, United States (n = 112), and Belize (n = 49). Seasonal patterns in whale shark occurrence were evident with encounters occurring in the western Caribbean Sea earlier in the year than in the GOM. There was also a significant sex bias with 2.6 times more males present than females. Seventy sharks were observed in more than one area and the highest degree of connectivity occurred among three aggregation sites along the Mesoamerican Reef. Despite this, the majority of resightings occurred in the area where the respective sharks were first identified. This was true for the WCA as a whole, with the exception of Belize. Site fidelity was highest in Mexico. Maximum likelihood modelling resulted in a population estimate of 2,167 (95% c.i. 1585.21–2909.86) sharks throughout the entire region. This study is the first attempt to provide a broad, regional population estimate using photo-identification data from multiple whale shark aggregations. Our aim is to provide population metrics, along with the description of region-scale connectivity, that will help guide conservation action in the WCA. At a global level, rapidly growing photographic databases are allowing for researchers to look beyond the description of single aggregation sites and into the ocean-scale ecology of this pelagic species.
The tiger shark (Galeocerdo cuvier) is globally distributed with established coastal and open-ocean movement patterns in many portions of its range. While all life stages of tiger sharks are known to occur in the Gulf of Mexico (GoM), variability in habitat use and movement patterns over ontogeny have never been quantified in this large marine ecosystem. To address this data gap we fitted 56 tiger sharks with Smart Position and Temperature transmitting tags between 2010 and 2018 and examined seasonal and spatial distribution patterns across the GoM. Additionally, we analyzed overlap of core habitats (i.e., 50% kernel density estimates) among individuals relative to large benthic features (oil and gas platforms, natural banks, bathymetric breaks). Our analyses revealed significant ontogenetic and seasonal differences in distribution patterns as well as across-shelf (i.e., regional) and sex-linked variability in movement rates. Presumably sub-adult and adult sharks achieved significantly higher movement rates and used off-shelf deeper habitats at greater proportions than juvenile sharks, particularly during the fall and winter seasons. Further, female maximum rate of movement was higher than males when accounting for size. Additionally, we found evidence of core regions encompassing the National Oceanographic and Atmospheric Administration designated Habitat Areas of Particular Concern (i.e., shelf-edge banks) during cooler months, particularly by females, as well as 2,504 oil and gas platforms. These data provide a baseline for future assessments of environmental impacts, such as climate variability or oil spills, on tiger shark movements and distribution in the region. Future
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