Direct coexistence molecular dynamics simulations of NaCl solutions and Lennard-Jones binary mixtures were performed to explore the origin of reported discrepancies between solubilities obtained by direct interfacial simulations and values obtained from the chemical potentials of the crystal and solution phases. We find that the key cause of these discrepancies is the use of crystal slabs of insufficient width to eliminate finite-size effects. We observe that for NaCl crystal slabs thicker than 4 nm (in the direction perpendicular to the interface), the same solubility values are obtained from the direct coexistence and chemical potential routes, namely, 3.7 ± 0.2 molal at T = 298.15 K and p = 1 bar for the JC-SPC/E model. Such finite-size effects are absent in the Lennard-Jones system and are likely caused by surface dipoles present in the salt crystals. We confirmed that μs-long molecular dynamics runs are required to obtain reliable solubility values from direct coexistence calculations, provided that the initial solution conditions are near the equilibrium solubility values; even longer runs are needed for equilibration of significantly different concentrations. We do not observe any effects of the exposed crystal face on the solubility values or equilibration times. For both the NaCl and Lennard-Jones systems, the use of a spherical crystallite embedded in the solution leads to significantly higher apparent solubility values relative to the flat-interface direct coexistence calculations and the chemical potential values. Our results have broad implications for the determination of solubilities of molecular models of ionic systems.

The purpose of the present Perspectives is to present a synopsis of the literature on bacterial "quorum sensing" as a background for the proposal that interference with this communication system offers potential targets for the design of novel antibiotic drugs. Quorum sensing is the recently discovered chemical communication system among bacteria (both Grampositive and -negative). It is vital for intra-and interbacterial gene regulation and for keeping bacterial colonies ("biofilms") intact, allowing resident bacteria to assume specialized roles that contribute to enhanced survival of the group. There are several processes involved in quorum sensing that are familiar to pharmacologists; i.e., specific signaling molecules bind to and activate receptors that transduce the quorum-sensing signal into intracellular second messenger responses. We highlight herein the similarity between quorum-sensing communication to ligand-receptor interactions, suggesting that inhibitor drugs could be designed using current standard pharmacologic principles. Such drugs would have novel mechanisms of action and might therefore be more effective against antibiotic-resistant strains of bacteria.

Building on the expertise from the Beaufort Weather Office, an objective method of identifying storm periods in the southern Beaufort Sea area based on surface wind speed criteria was developed. Algorithms that used hourly observations from Tuktoyaktuk and Sachs Harbour were trained to identify storm periods over the southern Beaufort Sea. The Master List produced by Eid and Cardone (1992)

Molten alkali-metal carbonates and hydroxides play important roles in the molten carbonate fuel cell and in Earth’s geochemistry. Molecular simulations allow us to study these systems at extreme conditions without the need for difficult experimentation. Using a genetic algorithm to fit ab intio molecular dynamics-computed densities and radial distribution functions, as well as experimental enthalpies of formation, we derive new classical force fields able to accurately predict liquid chemical potentials. These fitting properties were chosen to ensure accurate liquid phase structure and energetics. Although the predicted dynamics is slow when compared to experiments, in general the trends in dynamic properties across different systems still hold true. In addition, these newly parametrized force fields can be extended to the molten carbonate–hydroxide mixtures by using standard combining rules.

A systematic study of the dependence of electrolyte activity coefficients on simulation system size has been undertaken. Using implicit-solvent simulations for which calculations with low statistical uncertainty are feasible, it was found that the chemical potential for a NaCl model depends strongly on simulation system size at concentrations up to about 0.3 mol/L; system-size effects at higher concentrations are much smaller. Similar trends were confirmed in systems with an explicit solvent. System-size effects on the chemical potential, when uncorrected, can lead to systematic errors in the activity coefficient greater than 10%. The rigorous method to correct for such system-size effects is to perform multiple simulations at each concentration and extrapolate to infinite system size. Unfortunately, this becomes impractical for explicit-solvent simulations at low concentrations, because of computational limitations that lead to large statistical uncertainties in the results. Somewhat counterintuitively, we find that lower systematic errors for the Henry's law reference chemical potential are obtained by using simulations at higher concentrations, for which system-size effects are much smaller, to obtain estimates for the reference chemical potential. This is the case even though at these higher concentrations deviations from the Debye-Hückel limiting law (or its empirical extensions) are greater than those at lower concentrations.