Abstract.-Studies in biogeography and macroecology have been increasing massively since climate and biodiversity databases became easily accessible. Climate simulations for past, present, and future have enabled macroecologists and biogeographers to combine data on species' occurrences with detailed information on climatic conditions through time to predict biological responses across large spatial and temporal scales. Here we present and describe ecoClimate, a free and open data repository developed to serve useful climate data to macroecologists and biogeographers. ecoClimate arose from the need for climate layers with which to build ecological niche models and test macroecological and biogeographic hypotheses in the past, present, and future. ecoClimate offers a suite of processed, multi-temporal climate data sets from the most recent multi-model ensembles developed by the Coupled Modeling Intercomparison Projects (CMIP5) and Paleoclimate Modeling Intercomparison Projects (PMIP3) across past, present, and future time frames, at global extents and 0.5° spatial resolution, in convenient formats for analysis and manipulation. A priority of ecoClimate is consistency across these diverse data, but retaining information on uncertainties among model predictions. The ecoClimate research group intends to maintain the web repository updated continuously as new model outputs become available, as well as software that makes our workflows broadly accessible.
The fossil record acts as a time machine, providing data on the morphology, ecology and biogeography of ancient species. Therefore, ideally, fossil data should be included in evolutionary, macroecological and biogeographical studies. However, paleontological data are often not used in biological research, in part because of the difficulty of extracting occurrence records from the primary literature. The goal of the Paleobiology Database is to make these records generally accessible, but unlike databases such as Genbank and GBIF, a ready‐made interface to the R computing environment has not been available. We have developed paleobioDB, an R package designed to perform easy and flexible queries of the Paleobiology Database, including visualization, downloading and processing of selected data. This package facilitates access to paleontological data in a way that should allow further analysis using other packages and libraries available in R. The paleobioDB package should facilitate the integration of paleontological and neontological datasets, so that data from the deep past can be used to help inform our understanding of living biota, and vice versa.
Citizen science projects store an enormous amount of information about species distribution, diversity and characteristics. Researchers are now beginning to make use of this rich collection of data. However, access to these databases is not always straightforward. Apart from the largest and international projects, citizen science repositories often lack specific Application Programming Interfaces (APIs) to connect them to the scientific environments. Thus, it is necessary to develop simple routines to allow researchers to take advantage of the information collected by smaller citizen science projects, for instance, programming specific packages to connect them to popular scientific environments (like R). Here, we present rAvis, an R-package to connect R-users with Proyecto AVIS (http://proyectoavis.com), a Spanish citizen science project with more than 82,000 bird observation records. We develop several functions to explore the database, to plot the geographic distribution of the species occurrences, and to generate personal queries to the database about species occurrences (number of individuals, distribution, etc.) and birdwatcher observations (number of species recorded by each collaborator, UTMs visited, etc.). This new R-package will allow scientists to access this database and to exploit the information generated by Spanish birdwatchers over the last 40 years.
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