The sea-surface microlayer (SML) at the boundary between atmosphere and hydrosphere represents a demanding habitat for bacteria. Wind speed is a crucial but poorly studied factor for its physical integrity. Increasing atmospheric burden of CO2, as suggested for future climate scenarios, may particularly act on this habitat at the air–sea interface. We investigated the effect of increasing wind speeds and different pCO2 levels on SML microbial communities in a wind-wave tunnel, which offered the advantage of low spatial and temporal variability. We found that enrichment of bacteria in the SML occurred solely at a U10 wind speed of ≤5.6 m s−1 in the tunnel and ≤4.1 m s−1 in the Baltic Sea. High pCO2 levels further intensified the bacterial enrichment in the SML during low wind speed. In addition, low wind speed and pCO2 induced the formation of a distinctive bacterial community as revealed by 16S rRNA gene fingerprints and influenced the presence or absence of individual taxonomic units within the SML. We conclude that physical stability of the SML below a system-specific wind speed threshold induces specific bacterial communities in the SML entailing strong implications for ecosystem functioning by wind-driven impacts on habitat properties, gas exchange and matter cycling processes.

The continental subsurface houses a major portion of life’s abundance and diversity, yet little is known about viruses infecting microbes that reside there. Here, we use a combination of metagenomics and virus-targeted direct-geneFISH (virusFISH) to show that highly abundant carbon-fixing organisms of the uncultivated genus Candidatus Altiarchaeum are frequent targets of previously unrecognized viruses in the deep subsurface. Analysis of CRISPR spacer matches display resistances of Ca. Altiarchaea against eight predicted viral clades, which show genomic relatedness across continents but little similarity to previously identified viruses. Based on metagenomic information, we tag and image a putatively viral genome rich in protospacers using fluorescence microscopy. VirusFISH reveals a lytic lifestyle of the respective virus and challenges previous predictions that lysogeny prevails as the dominant viral lifestyle in the subsurface. CRISPR development over time and imaging of 18 samples from one subsurface ecosystem suggest a sophisticated interplay of viral diversification and adapting CRISPR-mediated resistances of Ca. Altiarchaeum. We conclude that infections of primary producers with lytic viruses followed by cell lysis potentially jump-start heterotrophic carbon cycling in these subsurface ecosystems.

This paper describes a state-of-the-art research catamaran to investigate processes such as air–sea gas exchange, heat exchange, surface blooms, and photochemistry at the sea surface microlayer (SML) with high-resolution measurements of 0.1-Hz frequency. As the boundary layer between the ocean and the atmosphere, the SML covers 70% of Earth. The remote-controlled Sea Surface Scanner is based on a glass disk sampler to automate the sampling of the thin SML, overcoming the disadvantages of techniques such as low volume sampling and ex situ measurement of the SML. A suite of in situ sensors for seven biogeochemical parameters (temperature, pH, dissolved oxygen, salinity, chromophoric dissolved organic matter, chlorophyll-a, and photosynthetic efficiency) was implemented to characterize the SML in reference to the mixed bulk water. The Sea Surface Scanner has the capability to collect 24 discrete water samples with a volume of 1 L each for further laboratory analysis. Meteorological parameters such as wind speed influence SML properties and are continuously monitored. This paper reports the use of the Sea Surface Scanner to identify and study (i) upwelling regions and associated fronts, (ii) rain events, and (iii) the occurrence of surface blooms. The high patchiness of the SML was detected during the observed sea surface phenomena, and high-resolution mapping of the biogeochemical parameters of the oceanic boundary layer to the atmosphere are presented for the first time. The Sea Surface Scanner is a new technology to map and understand sea surface processes and, ultimately, to fill the gaps in knowledge about ocean–atmosphere interactions relevant to ocean and climate science.

Highlights d Thousands of diverse viruses encode genes that manipulate organic sulfur metabolism d Infection in the presence of sulfide increases bacteriophage production d Engineered phage T7 retains cysteine synthase (cysK) over multiple generations d These viruses can influence human gut dysbiosis, microbiomes, and biogeochemistry

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Wind, chemical enhancement, phytoplankton activity, and surfactants are potential factors driving the air-sea gas exchange of carbon dioxide (CO 2). We investigated their effects on the gas transfer velocity of CO 2 in a large annular wind-wave tank filled with natural seawater from the North Atlantic Ocean. Experiments were run under 11 different wind speed conditions (ranging from 1.5 ms −1 to 22.8 ms −1), and we increased the water pCO 2 concentration twice by more than 950 µatm for two of the seven experimental days. We develop a conceptual box model that incorporated the thermodynamics of the marine CO 2 system. Surfactant concentrations in the sea surface microlayer (SML) ranged from 301 to 1015 µgL −1 (as Triton X-100 equivalents) with enrichments ranged from 1.0 to 5.7 in comparison to the samples from the underlying bulk water. With wind speeds up to 8.5 ms −1 , surfactants in the SML can reduce the gas transfer velocity by 54%. Wind-wave tank experiments in combination with modeling are useful tools for obtaining a better understanding of the gas transfer velocities of CO 2 across the air-sea boundary. The tank allowed for measuring the gas exchange velocity under extreme low and high wind speeds; in contrast, most previous parametrizations have fallen short because measurements of gas exchange velocities in the field are challenging, especially at low wind conditions. High variability in the CO 2 transfer velocities suggests that gas exchange is a complex process not solely controlled by wind forces, especially in low wind conditions.

Gas exchange across the air-water interface is strongly influenced by the uppermost water layer (<1 mm), the sea-surface microlayer (SML). However, a clear understanding about how the distinct physicochemical and biological properties of the SML affect gas exchange is lacking. We used an automatic microprofiler with Clark-type microsensors to measure small-scale profiles of dissolved oxygen in the upper 5 cm of the water column in a laboratory tank filled with natural seawater. We aimed to link changing oxygen concentrations and profiles with the metabolic activity of plankton and neuston, i.e., SML-dwelling organisms, in our artificial, low-turbulence setup during diel cycles. We observed that temporal changes of the oxygen concentration in near surface water (5 cm depth) could not be explained by diffusive loss of oxygen, but by planktonic activity. Interestingly, no influence of strong neuston activity on oxygen gradients at the air-water interface was detectable. This could be confirmed by a modeling approach, which revealed that neuston metabolic activity was insufficient to create distinct curvatures into these oxygen gradients. Moreover, the high neuston activity in our study contributed only ≤7.1% (see Supplementary Table 4) to changes in oxygen concentration in the tank. Overall, this work shows that temporal and vertical variation of oxygen profiles across the air-water interface in controlled laboratory setups is driven by biological processes in the underlying bulk water, with negligible effects of neuston activity.

Viruses play an essential role in shaping microbial community structures and serve as reservoirs for genetic diversity in many ecosystems. In hyperarid desert environments, where life itself becomes scarce and loses diversity, the interactions between viruses and host populations have remained elusive. Here, we resolved host-virus interactions in the soil metagenomes of the Atacama Desert hyperarid core, one of the harshest terrestrial environments on Earth. We show evidence of diverse viruses infecting a wide range of hosts found in sites up to 205 km apart. Viral genomes carried putative extremotolerance features (i.e., spore formation proteins) and auxiliary metabolic genes, indicating that viruses could mediate the spread of microbial resilience against environmental stress across the desert. We propose a mutualistic model of host-virus interactions in the hyperarid core where viruses seek protection in microbial cells as lysogens or pseudolysogens, while viral extremotolerance genes aid survival of their hosts. Our results suggest that the host-virus interactions in the Atacama Desert soils are dynamic and complex, shaping uniquely adapted microbiomes in this highly selective and hostile environment. IMPORTANCE Deserts are one of the largest and rapidly expanding terrestrial ecosystems characterized by low biodiversity and biomass. The hyperarid core of the Atacama Desert, previously thought to be devoid of life, is one of the harshest environments, supporting only scant biomass of highly adapted microbes. While there is growing evidence that viruses play essential roles in shaping the diversity and structure of nearly every ecosystem, very little is known about the role of viruses in desert soils, especially where viral contact with viable hosts is significantly reduced. Our results demonstrate that diverse viruses are widely dispersed across the desert, potentially spreading key stress resilience and metabolic genes to ensure host survival. The desertification accelerated by climate change expands both the ecosystem cover and the ecological significance of the desert virome. This study sheds light on the complex virus-host interplay that shapes the unique microbiome in desert soils.