No abstract

The CRISPR/Cas9 genome editing system has already proved its efficiency, versatility and simplicity in numerous applications in human, animal, microbe and plant cells. Together with the vast amount of genome and transcriptome databases available, it represents an enormous potential for plant breeding and research. Although most changes produced with CRISPR/Cas9 do not differ from naturally occurring mutations, the use of transgenesis during varietal development can still trigger GMO legislation in countries that rely on process-based regulation. Moreover, stable integration of DNA coding for genome-editing tools into plant genomes can result in insertional mutagenesis, while its prolonged expression can cause mutations in off-target sites. These pitfalls can be avoided with the delivery of preassembled ribonucleoprotein complexes (RNPs) composed of purified recombinant enzyme Cas9 and in vitro-transcribed or synthesized sgRNA. We therefore aimed to develop a DNA-free protocol for site-directed mutagenesis of three species of the genus Brassica (B. oleracea, B. napus, and B. rapa) with the use of RNPs. We chose cabbage, rapeseed and Chinese cabbage as species representatives and introduced RNPs into their protoplasts with PEG 4000. Four sgRNAs targeting two endogenous genes (the FRI and PDS genes, two sgRNAs per gene) were introduced into all three species. No mutations were detected after transfection of rapeseed protoplasts, while we obtained mutation frequencies of 0.09 to 2.25% and 1.15 to 24.51% in cabbage and Chinese cabbage, respectively. In both species, a positive correlation was displayed between the amount (7.5, 15, 30, and 60 μg) of Cas9 enzyme and sgRNA introduced and mutation frequency. Nucleotide changes (insertions and deletions) were detected 24 h after transfection and did not differ 72 h after transfection. They were species-, gene- and locus-dependent. In summary, we demonstrated the suitability of RNP transfection into B. oleracea and B. rapa protoplasts for high-efficiency indel induction of two endogenous genes. Due to the relatively high mutation frequencies detected (up to 24.51%), this study paves the way for regeneration of precisely mutated Brassica plants without the use of transgenesis.

Summary CRISPR‐mediated genome editing using the Streptococcus pyogenes Cas9 enzyme is revolutionizing life science by providing new, precise, facile and high‐throughput tools for genetic modification by the specific targeting of double‐strand breaks in the genome of hosts. Plant biotechnologists have extensively used the S. pyogenes Cas9‐based system since its inception in 2013. However, there are still some limitations to its even broader usage in plants. Major restrictions, especially in agricultural biotechnology, are the currently unclear regulatory status of plants modified with CRISPR/Cas9 and the lack of suitable delivery methods for some plant species. Solutions to these limitations could come in the form of new variants of genome editing enzymes that have recently been discovered and have already proved comparable to or even better in performance than S. pyogenes CRISPR/Cas9 in terms of precision and ease of delivery in mammal cells. Although some of them have already been tested in plants, most of them are less well known in the plant science community. In this review, we describe the following new enzyme systems engineered for genome editing, transcriptional regulation and cellular imaging—C2c2 from L. shahii; Cas9 from F. novicida, S. aureus, S. thermophiles, N. meningitidis; Cpf1 from F. novicida, Acidaminococcus and Lachnospiraceae; nickase, split, enhanced and other Cas9 variants from S. pyogenes; catalytically inactive SpCas9 linked to various nuclease or gene‐regulating domains—with an emphasis on their advantages in comparison with the broadly used SpCas9. In addition, we discuss new possibilities they offer in plant biotechnology.

Production of hull-less seeds of styrian oil pumpkin (Cucurbita pepo ssp. pepo var. styriaca) is increasing as a result of demand for aromatic seed oil and for other uses. Hybrid cultivars have recently been released but a method for haploid induction has not been established. We focused on the development of a parthenogenetic haploid induction protocol based on pollination with pollen irradiated with X-ray radiation at 0, 50, 100, 150, 200, 300, and 350 Gy. Fruit set largely decreased at 200 Gy, whereas a decline in embryo formation was observed at 100 Gy. Various accessions were tested as the female parent or as the pollen donor and large differences were found. The best parthenogenetic response was found in ‘Turkey #2’ (10.0%), ‘Gleisdorfer Ölkürbis’ (4.4%), and ‘Naked Seed’ (3.9%), whereas ‘GL Opal’ and ‘White Acorn’ were efficient as pollen donors. The ploidy level of 3830 putative parthenogenetic embryos was determined using flow cytometry. Four ploidy levels (n, 2n, 3n, and 4n) were found with the majority being diploid. Interestingly, a significant proportion was determined to be tetraploid and this was clearly correlated with increased radiation delivered to pollen grains. Using selected simple sequence repeat markers on diploid embryos, no spontaneous chromosome doubling could be confirmed. In this study, haploid induction in styrian oil pumpkin was elaborated for the first time. We also showed that X-ray pollen irradiation provides an alternative to gamma radiation treatment, yielding a sufficient percentage of haploid plantlets.

No abstract