Genomics and metabolomics are widely used to explore specialized metabolite diversity. The Paired Omics Data Platform is a community initiative to systematically document links between metabolome and (meta)genome data, aiding identification of natural product biosynthetic origins and metabolite structures.

Comparative genomic/metabolomic analysis is a powerful tool to disclose the potential of microbes for the biosynthesis of novel specialized metabolites. In the group of marine myxobacteria only a limited number of isolated species and sequenced genomes is so far available. However, the few compounds isolated thereof so far show interesting bioactivities and even novel chemical scaffolds; thereby indicating a huge potential for natural product discovery. In this study, all marine myxobacteria with accessible genome data (n = 5), including Haliangium ochraceum DSM 14365, Plesiocystis pacifica DSM 14875, Enhygromyxa salina DSM 15201 and the two newly sequenced species Enhygromyxa salina SWB005 and SWB007, were analyzed. All of these accessible genomes are large (~10 Mb), with a relatively small core genome and many unique coding sequences in each strain. Genome analysis revealed a high variety of biosynthetic gene clusters (BGCs) between the strains and several resistance models and essential core genes indicated the potential to biosynthesize antimicrobial molecules. Polyketides (PKs) and terpenes represented the majority of predicted specialized metabolite BGCs and contributed to the highest share between the strains. BGCs coding for non-ribosomal peptides (NRPs), PK/NRP hybrids and ribosomally synthesized and post-translationally modified peptides (RiPPs) were mostly strain specific. These results were in line with the metabolomic analysis, which revealed a high diversity of the chemical features between the strains. Only 6–11% of the metabolome was shared between all the investigated strains, which correlates to the small core genome of these bacteria (13–16% of each genome). In addition, the compound enhygrolide A, known from E. salina SWB005, was detected for the first time and structurally elucidated from Enhygromyxa salina SWB006. The here acquired data corroborate that these microorganisms represent a most promising source for the detection of novel specialized metabolites.

Bacteria of the family Rhodobacteraceae are widespread in marine environments and known to colonize surfaces, such as those of e.g., oysters and shells. The marine bacterium Labrenzia sp. 011 is here investigated and it was found to produce two cyclopropane-containing medium-chain fatty acids (1, 2), which inhibit the growth of a range of bacteria and fungi, most effectively that of a causative agent of Roseovarius oyster disease (ROD), Pseudoroseovarius crassostreae DSM 16950. Additionally, compound 2 acts as a potent partial, β-arrestin-biased agonist at the medium-chain fatty acid-activated orphan G-protein coupled receptor GPR84, which is highly expressed on immune cells. The genome of Labrenzia sp. 011 was sequenced and bioinformatically compared with those of other Labrenzia spp. This analysis revealed several cyclopropane fatty acid synthases (CFAS) conserved in all Labrenzia strains analyzed and a putative gene cluster encoding for two distinct CFASs is proposed as the biosynthetic origin of 1 and 2.

This experiment was conducted to evaluate the feasibility of gamma‐irradiated soybean meal (SBM) as a dietary ingredient on the performance, body composition, and digestive enzyme activity of Caspian brown trout, Salmo trutta caspius, juveniles. Five isonitrogenous and isoenergetic diets were formulated, in which fish meal was replaced by untreated (untreated SBM), gamma‐ray irradiated at 15 (15ISBM) and 30 (30ISBM) kGy, fermented (FSBM), fermented 15 KGy irradiated soybean meal (FISBM), respectively. Juvenile fish (2.1 ± 0.3 g) were fed with the test diets for 6 wk. Final body weight was significantly affected by dietary SBM treatment with highest values in fish fed FISBM and FSBM (P < 0.05). There were no significant differences in hepatosomatic and visceral indexes, condition factor, and survival among experimental groups (P > 0.05). The carcass proximate composition of lipid and protein in Caspian brown trout in FSBM and FISBM groups was higher than that of other groups. Levels of most whole‐body amino acids were not significantly different among Caspian brown trout fed the five diets. Results of this experiment showed that replacing SBM with FSBM and FISBM in the diet significantly increased the activities of proteolytic enzymes activities (P < 0.05). However, no significant differences were observed in both amylase and lipase activities among dietary treatments. Results of this study indicated that the level of gamma radiation used did not work but fermentation of SBM did increase some growth parameters of Caspian brown trout.

Marine bacteria are excellent yet often underexplored sources of structurally unique bioactive natural products.