A close-up look at eight water molecules
A raindrop may look small, but it contains far too much water to model with the highest chemical precision. Theorists rely on studies of clusters with just a few molecules to enhance their understanding of the quantum-mechanical forces at play in the liquid. Cole
et al.
now report a high-resolution spectrum in the terahertz regime of the eight-membered cluster. By resolving 99 absorption lines associated with a collective torsional mode, the authors distinguish prolate and oblate isomers that are very similar in energy.
Science
, this issue p.
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The sulfate ion is the most kosmotropic member of the Hofmeister series, but the chemical origins of this effect are unclear. We present a global optimization and energy landscape mapping study of microhydrated sulfate ions, SO4(2-)(H2O)n, in the size range 3 ≤ n ≤ 50. The clusters are modeled using a rigid-body empirical potential and optimized using basin-hopping Monte Carlo in conjunction with a move set including cycle inversions to explore hydrogen bond topologies. For clusters containing a few water molecules (n ≤ 6) we are able to reproduce ab initio global minima, either as global minima of the empirical potential, or as low-energy isomers. This result justifies applications to larger systems. Experimental studies have shown that dangling hydroxyl groups are present on the surfaces of pure water clusters, but absent in hydrated sulfate clusters up to n ≈ 43. Our global optimization results agree with this observation, with dangling hydroxyl groups absent from the low-lying minima of small clusters, but competitive in larger clusters.
A set of benchmark systems is defined to compare different computational approaches for characterizing local minima, transition states, and pathways in atomic, molecular, and condensed matter systems. Comparisons between several commonly used methods are presented. The strengths and weaknesses are discussed, as well as implementation details that are important for achieving good performance. All of the benchmarks and methods are provided in an online database to make the implementation details available and the results reproducible. While this paper provides a snapshot of the benchmark results, the online framework is structured to be dynamic and incorporate new methods and codes as they are developed.
The emergence of observable properties from the organisation of the underlying potential energy landscape is analysed, spanning a full range of complexity from self-organising to glassy and jammed systems. The examples include atomic and molecular clusters, a β-barrel protein, the GNNQQNY peptide dimer, and models of condensed matter that exhibit structural glass formation and jamming. We have considered measures based on several different properties, namely, the Shannon entropy, an equilibrium thermodynamic measure that uses a sample of local minima, and indices that require additional information about the connections between local minima in the form of transition states. A frustration index is defined that correlates directly with key properties that distinguish relaxation behaviour within this diverse set. The index uses the ratio of the energy barrier to the energy difference with reference to the global minimum. The contributions for each local minimum are weighted by the equilibrium occupation probabilities. Hence we obtain fundamental insight into the connections and distinctions between systems that cover the continuum from efficient structure-seekers to landscapes that exhibit broken ergodicity and rare event dynamics.
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