UKRmol+ is a new implementation of the UK R-matrix electron-molecule scattering code. Key features of the implementation are the use of quantum chemistry codes such as Molpro to provide target molecular orbitals; the optional use of mixed Gaussian -B-spline basis functions to represent the continuum and improved configuration and Hamiltonian generation. The code is described, and examples covering electron collisions from a range of targets, positron collisions and photionisation are presented. The codes are freely available as a tarball from Zenodo. [2] A. Brown et al RMT: R-matrix with time-dependence. Solving the semirelativistic, time-dependent Schrödinger equation for general, multi-electron atoms and molecules in intense, ultrashort, arbitrarily polarized laser pulses., Computer Phys. Comm., submitted

RMT is a program which solves the time-dependent Schrödinger equation for general, multielectron atoms, ions and molecules interacting with laser light. As such it can be used to model ionization (single-photon, multiphoton and strong-field), recollision (high-harmonic generation, strong-field rescattering), and more generally absorption or scattering processes with a full account of the multielectron correlation effects in a time-dependent manner. Calculations can be performed for targets interacting with ultrashort, intense laser pulses of long-wavelength and arbitrary polarization. Calculations for atoms can optionally include the Breit-Pauli correction terms for the description of relativistic (in particular, spin-orbit) effects. PROGRAM SUMMARYProgram Title: (RMT) R-matrix with time-dependence Licensing provisions: GPLv3 Programming language: Fortran Program repository available at: https://gitlab.com/UK-AMOR/RMT Computers on which the program has been tested: Cray XC40 BESKOW, Cray XC30 ARCHER, Cray XK7 TITAN, TACC Stampede2, DELL linux cluster, DELL PC Number of processors used: Min. 2, Max. tested 16,416 Number of lines in program: 25,247 Distribution format: git repository Nature of problem:The interaction of laser light with matter can be modelled with the time-dependent Schrödinger equation (TDSE). The solution of the TDSE for general, multielectron atomic and molecular systems is computationally demanding, and has previously been limited to either particular laser wavelengths and intensities, or to simple, few-electron cases. RMT overcomes this limitation by using a general approach to modelling dynamics in atoms and molecules which is applicable to multi-electron systems and a wide range of perturbative and non-perturbative phenomena. Solution method:We use the R-matrix paradigm, partitioning the interaction region into an 'inner' and an 'outer' region. In the inner region (within some small radius of the nucleus/nuclei), full account is taken of all multielectron interactions including electron exchange and correlation. In the outer region, far from the nucleus/nuclei, these are neglected and a single, ionized electron moves in the long-range potential of the residual ionic system and the laser field. The key computational aspect of the RMT approach is the use of a different numerical approach in each region, facilitating efficient parallelization without sacrificing accuracy. Given an initial wavefunction and the electric field of the driving laser pulse, the wavefunction for all subsequent times and the associated observables are computed using an explicit, Arnoldi propagator method. Additional comments including restrictions and unusual features:The description of the atomic/molecular structure is provided from other, timeindependent R-matrix codes [1][2][3], and the capabilities (in terms of structure) are, in some sense, inherited therefrom. Thus, the atomic calculations can optionally include Breit-Pauli relativistic corrections to the Hamiltonian, in order to account

We introduce and demonstrate a new high performance image reconstruction method for super-resolution structured illumination microscopy based on maximum a posteriori probability estimation (MAP-SIM). Imaging performance is demonstrated on a variety of fluorescent samples of different thickness, labeling density and noise levels. The method provides good suppression of out of focus light, improves spatial resolution, and allows reconstruction of both 2D and 3D images of cells even in the case of weak signals. The method can be used to process both optical sectioning and super-resolution structured illumination microscopy data to create high quality super-resolution images.

Collisions of low energy electrons with molecules are important for understanding many aspects of the environment and technologies. Understanding the processes that occur in these types of collisions can give insights into plasma etching processes, edge effects in fusion plasmas, radiation damage to biological tissues and more. A radical update of the previous expert system for computing observables relevant to these processes, Quantemol-N, is presented. The new Quantemol Electron Collision (QEC) expert system simplifyies the user experience, improving reliability and implements new features. The QEC graphical user interface (GUI) interfaces the Molpro quantum chemistry package for molecular target setups, and the sophisticated UKRmol+ codes to generate accurate and reliable cross-sections. These include elastic cross-sections, super elastic cross-sections between excited states, electron impact dissociation, scattering reaction rates, dissociative electron attachment, differential cross-sections, momentum transfer cross-sections, ionization cross sections, and high energy electron scattering cross-sections. With this new interface we will be implementing dissociative recombination estimations, vibrational excitations for neutrals and ions, and effective core potentials in the near future.

The ab initio R-matrix with time method has recently been extended to allow simulation of fully nonperturbative multielectron processes in molecules driven by ultrashort arbitrarily polarized strong laser fields. Here we demonstrate the accuracy and capabilities of the current implementation of the method for two targets: We study single-photon and multiphoton ionization of H 2 and one-photon and strong-field ionization of H 2 O and compare the results to available experimental and theoretical data as well as our own time-independent R-matrix calculations. We obtain a highly accurate description of total and state-to-state single-photon ionization of H 2 O and, using a simplified coupled-channel model, we show that state coupling is essential to obtain qualitatively correct results and that its importance as a function of laser intensity changes. We find that electron correlation plays a more important role at low intensities (up to approximately 50 TW/cm 2).