Cancers exhibit extensive mutational heterogeneity and the resulting long tail phenomenon complicates the discovery of the genes and pathways that are significantly mutated in cancer. We perform a Pan-Cancer analysis of mutated networks in 3281 samples from 12 cancer types from The Cancer Genome Atlas (TCGA) using HotNet2, a novel algorithm to find mutated subnetworks that overcomes limitations of existing single gene and pathway/network approaches.. We identify 14 significantly mutated subnetworks that include well-known cancer signaling pathways as well as subnetworks with less characterized roles in cancer including cohesin, condensin, and others. Many of these subnetworks exhibit co-occurring mutations across samples. These subnetworks contain dozens of genes with rare somatic mutations across multiple cancers; many of these genes have additional evidence supporting a role in cancer. By illuminating these rare combinations of mutations, Pan-Cancer network analyses provide a roadmap to investigate new diagnostic and therapeutic opportunities across cancer types.

We successfully transferred and applied -omics concepts to the study of material degradation, in particular historic paper. The main volatile degradation products of paper, constituting the particular "smell of old books", were determined using headspace analysis after a 24 h predegradation procedure. Using supervised and unsupervised methods of multivariate data analysis, we were able to quantitatively correlate volatile degradation products with properties important for the preservation of historic paper: rosin, lignin and carbonyl group content, degree of polymerization of cellulose, and paper acidity. On the basis of volatile degradic footprinting, we identified degradation markers for rosin and lignin in paper and investigated their effect on degradation. Apart from the known volatile paper degradation products acetic acid and furfural, we also put forward a number of other compounds of potential interest, most notably lipid peroxidation products. The nondestructive approach can be used for rapid identification of degraded historic objects on the basis of the volatile degradation products emitted by degrading paper.

The design and experimental method for the use of a novel instrument for lightfastness measurements on artwork is presented. The new microfadometer design offers increased durability and portability over the previous, published design, broadening the scope of locations at which data can be acquired. This reduces the need for art handling or transportation in order to gain evidence-based risk assessments for the display of light-sensitive artworks. The instrument focuses a stabilized high powered xenon lamp to a spot 0.25 millimeters (FWHM) while simultaneously monitoring color change. This makes it possible to identify pigments and determine the lightfastness of materials effectively and non-destructively. With 2.59mW or 0.82 lumens (1.7 x10 7 lux for a 0.25mm focused spot) the instrument is capable of fading Blue Wool 1 to a measured 11 ∆E ab value (using CIE standard illuminant D65) in 15 minutes. The temperature increase created by focused radiation was measured to be 3 to 4°C above room temperature. The system was stable within 0.12 ∆E ab over 1 hour and 0.31 ∆E ab over 7 hours . A safety evaluation of the technique is discussed which concludes that some caution should be employed when fading smooth, uniform areas of artworks. The instrument can also incorporate a linear variable filter. This enables the researcher to identify the active wavebands that cause certain degradation reactions and determine the degree of wavelength dependence of fading. Some preliminary results of fading experiments on Prussian blue samples from the paint box of J. M. W Turner (1755-1851) are presented.

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In this article, the design and characteristics of a micro-fadeometer is presented. The technique allows for a non-(micro-) destructive evaluation of the light fastness of colorants on various materials and can be used to directly assess valuable materials, such as heritage objects, and develop safer display strategies to promote their preservation. The presented instrument has several benefits over standard light ageing methods--low operating cost, non-damaging, real time measurement of induced changes for kinetics studies, and automated high throughput screening of materials. A selection of data is presented to demonstrate the flexibility of the presented instrument and illustrate how it can be used to evaluate museum lighting and oxygen-free display of heritage objects.

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