<abstract><p>We propose a new mathematical framework for the addition of stochastic attachment to biofilm models, via the use of random ordinary differential equations. We focus our approach on a spatially explicit model of cellulolytic biofilm growth and formation that comprises a PDE-ODE coupled system to describe the biomass and carbon respectively. The model equations are discretized in space using a standard finite volume method. We introduce discrete attachment events into the discretized model via an impulse function with a standard stochastic process as input. We solve our model with an implicit ODE solver. We provide basic simulations to investigate the qualitative features of our model. We then perform a grid refinement study to investigate the spatial convergence of our model. We investigate model behaviour while varying key attachment parameters. Lastly, we use our attachment model to provide evidence for a stable travelling wave solution to the original PDE-ODE coupled system.</p></abstract>
We analyze travelling wave (TW) solutions for nonlinear systems consisting of an ODE coupled to a degenerate PDE with a diffusion coefficient that vanishes as the solution tends to zero and blows up as it approaches its maximum value. Stable TW solutions for such systems have previously been observed numerically as well as in biological experiments on the growth of cellulolytic biofilms. In this work, we provide an analytical justification for these observations and prove existence and stability results for TW solutions of such models. Using the TW ansatz and a first integral, the system is reduced to an autonomous dynamical system with two unknowns. Analysing the system in the corresponding phase–plane, the existence of a unique TW is shown, which possesses a sharp front and a diffusive tail, and is moving with a constant speed. The linear stability of the TW in two space dimensions is proven under suitable assumptions on the initial data. Finally, numerical simulations are presented that affirm the theoretical predictions on the existence, stability, and parametric dependence of the travelling waves.
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