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Twenty slurries, 20 farmyard manures (FYM) and 10 poultry manures were chemically analysed to characterize their nitrogen (N) fractions and to assess their potential organic N supply. The organic N fraction varied between manure types and represented from 14% to 99% of the total N content. The readily mineralizable N fraction, measured by refluxing with KCl, was largest in the pig FYMs and broiler litters, but on average only represented 7–8% of the total N content. A pot experiment was undertaken to measure N mineralization from the organic N fraction of 17 of these manures. The ammonium-N content of the manures was removed and the remaining organic N mixed with a low mineral N status sandy soil, which was sown with perennial ryegrass (Lolium perenne L.). N offtake was used as a measure of mineralization throughout the 199 day experiment. The greatest N mineralization was measured from a layer manure and a pig slurry, where N offtake represented 56% and 37% of the organic N added, respectively. Lowest (%) N mineralization was measured from a dairy cow slurry (< 2%) and a beef FYM (6%). The mineralization rate was negatively related to the C[ratio ]organic N ratio of the ammonium-N stripped manures (P < 0·01, r = −0·63).

Nitrous oxide emissions (N 2 O) from agricultural land are spatially and temporally variable. Most emission measurements are made with small ( 1 m 2 area) static chambers. We used N 2 O chamber data collected from multiple field experiments across different geo-climatic zones in the UK and from a range of nitrogen treatments to quantify uncertainties associated with flux measurements. Data were analysed to assess the spatial variability of fluxes, the degree of linearity of headspace N 2 O accumulation and the robustness of using ambient air N 2 O concentrations as a surrogate for sampling immediately after closure (T 0 ). Data showed differences of up to more than 50-fold between the maximum and minimum N 2 O flux from five chambers within one plot on a single sampling occasion, and that reliability of flux measurements increased with greater numbers of chambers. In more than 90% of the 1970 cases where linearity of headspace N 2 O accumulation was measured (with four or more sampling points), linear accumulation was observed; however, where non-linear accumulation was seen this could result in a 26% under-estimate of the flux. Statistical analysis demonstrated that the use of ambient air as a surrogate for T 0 headspace samples did not result in any consistent bias in calculated fluxes. Spatial variability has the potential to result in erroneous flux estimates if not taken into account, and generally introduces a far larger uncertainty into the calculated flux (commonly orders of magnitude more) than any uncertainties introduced through reduced headspace sampling or assumption of linearity of headspace accumulation. Hence, when deploying finite resources, maximizing chamber numbers should be given priority over maximizing the number of headspace samplings per enclosure period.

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Urine patches and dung pats from grazing livestock create hotspots for production and emission of the greenhouse gas, nitrous oxide (N2O), and represent a large proportion of total N2O emissions in many national agricultural greenhouse gas inventories. As such, there is much interest in developing country specific N2O emission factors (EFs) for excretal nitrogen (EF3, pasture, range and paddock) deposited during gazing. The aims of this study were to generate separate N2O emissions data for cattle derived urine and dung, to provide an evidence base for the generation of a country specific EF for the UK from this nitrogen source. The experiments were also designed to determine the effects of site and timing of application on emissions, and the efficacy of the nitrification inhibitor, dicyandiamide (DCD) on N2O losses. This co-ordinated set of 15 plot-scale, year-long field experiments using static chambers was conducted at five grassland sites, typical of the soil and climatic zones of grazed grassland in the UK. We show that the average urine and dung N2O EFs were 0.69% and 0.19%, respectively, resulting in a combined excretal N2O EF (EF3), of 0.49%, which is <25% of the IPCC default EF3 for excretal returns from grazing cattle. Regression analysis suggests that urine N2O EFs were controlled more by composition than was the case for dung, whilst dung N2O EFs were more related to soil and environmental factors. The urine N2O EF was significantly greater from the site in SW England, and significantly greater from the early grazing season urine application than later applications. Dycandiamide reduced the N2O EF from urine patches by an average of 46%. The significantly lower excretal EF3 than the IPCC default has implications for the UK's national inventory and for subsequent carbon footprinting of UK ruminant livestock products.

Ammonia (NH3) emission from animal manure contributes to air pollution and ecosystem degradation, and the loss of reactive nitrogen (N) from agricultural systems. Estimates of NH3 emission are necessary for national inventories and nutrient management, and NH3 emission from field-applied manure has been measured in many studies over the past few decades. In this work, we facilitate the use of these data by collecting and organizing them in the ALFAM2 database. In this paper we describe the development of the database and summarise its contents, quantify effects of application methods and other variables on emission using a data subset, and discuss challenges for data analysis and model development. The database contains measurements of emission, manure and soil properties, weather, application technique, and other variables for 1899 plots from 22 research institutes in 12 countries. Data on five manure types (cattle, pig, mink, poultry, mixed, as well as sludge and "other") applied to three types of crops (grass, small grains, maize, as well as stubble and bare soil) are included. Application methods represented in the database include broadcast, trailing hose, trailing shoe (narrow band application), and open slot injection. Cattle manure application to grassland was the most common combination, and analysis of this subset (with dry matter (DM) limited to <15%) was carried out using mixed-and fixed-effects models in order to quantify effects of management and environment on ammonia emission, and to highlight challenges for use of the database. Measured emission from cattle slurry ranged from < 1% to 130% of applied ammonia after 48 hours. Results showed clear, albeit variable, reductions in NH3 emission due to trailing hose, trailing shoe, and open slot injection of slurry compared to broadcast application. There was evidence of positive effects of air temperature and wind speed on NH3 emission, and limited evidence of effects of slurry DM. However, random-effects coefficients for differences among research institutes were among the largest model coefficients, and 4 showed a deviation from the mean response by more than 100% in some cases. The source of these institute differences could not be determined with certainty, but there is some evidence that they are related to differences in soils, or differences in application or measurement methods. The ALFAM2 database should be useful for development and evaluation of both emission factors and emission models, but users need to recognize the limitations caused by confounding variables, imbalance in the dataset, and dependence among observations from the same institute. Variation among measurements and in reported variables highlights the importance of international agreement on how NH3 emission should be measured, along with necessary types of supporting data and standard protocols for their measurement. Both are needed in order to produce more accurate and useful ammonia emission measurements. Expansion of the ALFAM2 database will continue, and readers are invited...

A B S T R A C TMulti-locus phylogenetic studies of echinoderms based on Sanger and RNA-seq technologies and the fossil record have provided evidence for the Asterozoa-Echinozoa hypothesis. This hypothesis posits a sister relationship between asterozoan classes (Asteroidea and Ophiuroidea) and a similar relationship between echinozoan classes (Echinoidea and Holothuroidea). Despite this consensus around Asterozoa-Echinozoa, phylogenetic relationships within the class Asteroidea (sea stars or starfish) have been controversial for over a century. Open questions include relationships within asteroids and the status of the enigmatic taxon Xyloplax. Xyloplax is thought by some to represent a newly discovered sixth class of echinoderms -and by others to be an asteroid. To address these questions, we applied a novel workflow to a large RNA-seq dataset that encompassed a broad taxonomic and genomic sample. This study included 15 species sampled from all extant orders and 13 families, plus four ophiuroid species as an outgroup. To expand the taxonomic coverage, the study also incorporated five previously published transcriptomes and one previously published expressed sequence tags (EST) dataset. We developed and applied methods that used a range of alignment parameters with increasing permissiveness in terms of gap characters present within an alignment. This procedure facilitated the selection of phylogenomic data subsets from large amounts of transcriptome data. The results included 19 nested data subsets that ranged from 37 to 4,281 loci. Tree searches on all data subsets reconstructed Xyloplax as a velatid asteroid rather than a new class. This result implies that asteroid morphology remains labile well beyond the establishment of the body plan of the group. In the phylogenetic tree with the highest average asteroid nodal support several monophyletic groups were recovered. In this tree, Forcipulatida and Velatida are monophyletic and form a clade that includes Brisingida as sister to Forcipulatida. Xyloplax is consistently recovered as sister to Pteraster. Paxillosida and Spinulosida are each monophyletic, with Notomyotida as sister to the Paxillosida. Valvatida is recovered as paraphyletic. The results from other data subsets are largely consistent with these results. Our results support the hypothesis that the earliest divergence event among extant asteroids separated Velatida and Forcipulatacea from Valvatacea and Spinulosida.

MANNER‐NPK (MANure Nutrient Evaluation Routine) is a decision support tool for quantifying manure (and other organic material) crop available nutrient supply. The user‐friendly design of an earlier version of MANNER was retained, but in response to user and stakeholder feedback, additional functionality was included to underpin new and revised nitrogen (N) transformation/loss modules (covering ammonia volatilization, nitrate leaching and nitrous oxide/di‐nitrogen emissions, and organic N mineralization) and also to estimate manure phosphorus (as P2O5), potassium (as K2O), sulphur (as SO3) and magnesium (as MgO) supply. Notably, MANNER‐NPK provides N availability estimates for following crops through the mineralization of organic N. Validation of the crop available N supply estimates was undertaken by comparing predicted values with data from more than 200 field experimental measurements. For cattle, pig and poultry manures, there was good agreement (P < 0.001) between predicted and measured fertilizer N replacement values, indicating that MANNER‐NPK provides robust estimates of manure crop available N supply and N losses to the wider environment.