We consider Wilson loop observables for Chern-Simons theory at large N and its topological string dual and extend the previous checks for this duality to the case of links. We find an interesting structure involving representation/spin degeneracy of branes ending on branes which features in the large N dual description of Chern-Simons theory. This leads to a refinement of the integer invariants for links and knots. We illustrate our results with explicit computations on the Chern-Simons side.

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We make a precision test of a recently proposed conjecture relating Chern-Simons gauge theory to topological string theory on the resolution of the conifold. First, we develop a systematic procedure to extract string amplitudes from vacuum expectation values (vevs) of Wilson loops in Chern-Simons gauge theory, and then we evaluate these vevs in arbitrary irreducible representations of SU (N ) for torus knots. We find complete agreement with the predictions derived from the target space interpretation of the string amplitudes. We also show that the structure of the free energy of topological open string theory gives further constraints on the Chern-Simons vevs. Our work provides strong evidence towards an interpretation of knot polynomial invariants as generating functions associated to enumerative problems.

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