Context. Protoplanetary disks are vital objects in star and planet formation, possessing all the material, gas and dust, which may form a planetary system orbiting the new star. Small, simple molecules have traditionally been detected in protoplanetary disks; however, in the ALMA era, we expect the molecular inventory of protoplanetary disks to significantly increase. Aims. We investigate the synthesis of complex organic molecules (COMs) in protoplanetary disks to put constraints on the achievable chemical complexity and to predict species and transitions which may be observable with ALMA. Methods. We have coupled a 2D steady-state physical model of a protoplanetary disk around a typical T Tauri star with a large gas-grain chemical network including COMs. We compare the resulting column densities with those derived from observations and perform ray-tracing calculations to predict line spectra. We compare the synthesised line intensities with current observations and determine those COMs which may be observable in nearby objects. We also compare the predicted grain-surface abundances with those derived from cometary comae observations. Results. We find COMs are efficiently formed in the disk midplane via grain-surface chemical reactions, reaching peak grain-surface fractional abundances ∼10 −6 -10 −4 that of the H nuclei number density. COMs formed on grain surfaces are returned to the gas phase via non-thermal desorption; however, gas-phase species reach lower fractional abundances than their grain-surface equivalents, ∼10 −12 -10 −7 . Including the irradiation of grain mantle material helps build further complexity in the ice through the replenishment of grain-surface radicals which take part in further grain-surface reactions. There is reasonable agreement with several line transitions of H 2 CO observed towards T Tauri star-disk systems. There is poor agreement with HC 3 N lines observed towards LkCa 15 and GO Tau and we discuss possible explanations for these discrepancies. The synthesised line intensities for CH 3 OH are consistent with upper limits determined towards all sources. Our models suggest CH 3 OH should be readily observable in nearby protoplanetary disks with ALMA; however, detection of more complex species may prove challenging, even with ALMA "Full Science" capabilities. Our grain-surface abundances are consistent with those derived from cometary comae observations providing additional evidence for the hypothesis that comets (and other planetesimals) formed via the coagulation of icy grains in the Sun's natal disk.
The data indicate that transesophageal echocardiography leads to a significant improvement in the diagnosis of abscesses associated with endocarditis. The technique facilitates the identification of patients with endocarditis who have an increased risk of death and permits earlier treatment.
Context. The elemental depletion of interstellar sulfur from the gas phase has been a recurring challenge for astrochemical models. Observations show that sulfur remains relatively non-depleted with respect to its cosmic value throughout the diffuse and translucent stages of an interstellar molecular cloud, but its atomic and molecular gas-phase constituents cannot account for this cosmic value towards lines of sight containing higher-density environments. Aims. We have attempted to address this issue by modeling the evolution of an interstellar cloud from its pristine state as a diffuse atomic cloud to a molecular environment of much higher density, using a gas/grain astrochemical code and an enhanced sulfur reaction network. Methods. A common gas/grain astrochemical reaction network has been systematically updated and greatly extended based on previous literature and previous sulfur models, with a focus on the grain chemistry and processes. A simple astrochemical model was used to benchmark the resulting network updates, and the results of the model were compared to typical astronomical observations sourced from the literature. Results. Our new gas/grain astrochemical model is able to reproduce the elemental depletion of sulfur, whereby sulfur can be depleted from the gas-phase by two orders of magnitude, and that this process may occur under dark cloud conditions if the cloud has a chemical age of at least 10 6 years. The resulting mix of sulfur-bearing species on the grain ranges across all the most common chemical elements (H/C/N/O), not dissimilar to the molecules observed in cometary environments. Notably, this mixture is not dominated simply by H 2 S, unlike all other current astrochemical models. Conclusions. Despite our relatively simple physical model, most of the known gas-phase S-bearing molecular abundances are accurately reproduced under dense conditions, however they are not expected to be the primary molecular sinks of sulfur. Our model predicts that most of the "missing" sulfur is in the form of organo-sulfur species trapped on grains.
Both grain surface and gas phase chemistry have been invoked to explain the disparate relative abundances of methyl formate and its structural isomers acetic acid and glycolaldehyde in the Sgr B2(N) star-forming region. While a network of grain surface chemistry involving radical-radical reactions during the warm-up phase of a hot core is the most chemically viable option proposed to date, neither qualitative nor quantitative agreement between modeling and observation has yet been obtained. In this study, we seek to test additional grain surface and gas phase processes to further investigate methyl formate-related chemistry by implementing several modifications to the Ohio State University gas/grain chemical network. We added two new gas phase chemical pathways leading to methyl formate, one involving an exothermic, barrierless reaction of protonated methanol with neutral formic acid; and one involving the reaction of protonated formic acid with neutral methanol to form both the cis and trans forms of protonated methyl formate. In addition to these gas phase processes, we have also investigated whether the relative product branching ratios for methanol photodissociation on grains influence the relative abundances of methyl formate and its structural isomers. We find that while the new gas phase formation pathways do not alter the relative abundances of methyl formate and its structural isomers, changes in the photodissociation branching ratios and adjustment of the overall timescale for warm-up can be used to explain their relative ratios in Sgr B2(N).
Complex organic molecules have been observed for decades in the interstellar medium. Some of them might be considered as small bricks of the macromolecules at the base of terrestrial life. It is hence particularly important to understand organic chemistry in Solar-like star-forming regions. In this article, we present a new observational project: Seeds Of Life In Space (SOLIS). This is a Large Project using the IRAM-NOEMA interferometer, and its scope is to image the emission of several crucial organic molecules in a sample of Solar-like star-forming regions in different evolutionary stages and environments. Here we report the first SOLIS results, obtained from analyzing the spectra of different regions of the Class 0 source NGC 1333-IRAS4A, the protocluster OMC-2 FIR4, and the shock site L1157-B1. The different regions were identified based on the images of formamide (NH 2 CHO) and cyanodiacetylene (HC 5 N) lines. We discuss the observed large diversity in the molecular and organic content, both on large (3000-10,000 au) and relatively small (300-1000 au) scales. Finally, we derive upper limits to the methoxy fractional abundance in the three observed regions of the same order of magnitude of that measured in a few cold prestellar objects, namely 10 12 --10 −11 with respect to H 2 molecules.
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