Phylogenetic relationships among species and subspecies of the Canary Island endemic lizard genus Gallotia are inferred based on nucleotide sequences of fragments of 12S ribosomal RNA and cytochrome b mitochondrial genes. The four morphologically established species have also been recognized at the molecular level. Relative affinities among species follow an eastern-western geographic transect. The nearly extinct species Gallotia simonyi from the most western island of El Hierro is closely related to the common western species Gallotia galloti, the nearest branch to this pair is Gallotia stehlini from the central island of Gram Canaria, and finally, Gallotia atlantica from the two eastern and geologically oldest islands appears as the most distantly related species of the group. At the statistical level, four subspecies can be recognized in G. galloti, but only two in G. atlantica.

Sequences from fragments of the 12S ribosomal RNA and cytochrome b mitochondrial genes were used to analyze phylogenetic relationships among geckos of genus Tarentola from the Canary Islands. A surprisingly high level of within island differentiation was found in T. delalandii in Tenerife and T. boettgeri in Gran Canaria. Molecular differentiation between populations of T. angustimentalis on Lanzarote and Fuerteventura, and between Moroccan and Iberian Peninsula T. mauritanica, also indicate that at least two subspecies should be recognized within each of them. Phylogenetic relationships among these species reveals a higher level of differentiation and a more complex colonization pattern than those found for the endemic genus Gallotia. Lack of evidence for the presence of T. boettgeri bischoffi on the island of Madeira does not seem to support the origin of T. delalandii, T. gomerensis and the canarian subspecies of T. boettgeri from this island, whereas molecular data confirms that T. angustimentalis is a sister species of the continental T. mauritanica. Several independent colonization events from the continent and the extinction of some species are probably responsible for the current distribution of Tarentola in the Canary Islands.

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