SUMMARY The history of life offers plentiful examples of convergent evolution, the independent derivation of similar phenotypes in distinct lineages [1]. Convergent phenotypes among closely related lineages (frequently termed “parallel” evolution) are often assumed to result from changes in similar genes or developmental pathways [2], but the genetic origins of convergence remains poorly understood. Ninespine (Pungitius pungitius) and threespine (Gasterosteus aculeatus) stickleback fish provide many examples of convergent evolution of adaptive phenotypes, both within and between genera. The genetic architecture of several important traits is now known for threespine sticklebacks [3–10]; thus, ninespine sticklebacks thus provide a unique opportunity to critically test whether similar or different chromosome regions control similar phenotypes in these lineages. We have generated the first genome-wide linkage map for the ninespine stickleback and used quantitative trait locus (QTL) mapping to identify chromosome regions controlling several skeletal traits and sex determination. In ninespine sticklebacks, these traits mapped to chromosome regions not previously known to control the corresponding traits in threespine sticklebacks. Therefore, convergent morphological evolution in these related, but independent, vertebrate lineages may have different genetic origins. Comparative genetics in sticklebacks provides an exciting opportunity to study the mechanisms controlling similar phenotypic changes in different groups of animals.

The current geographical distribution of the ninespine stickleback (Pungitius pungitius) was shaped in large part by the glaciation events of the Pleistocene epoch (2.6 Mya-1 Kya). Previous efforts to elucidate the phylogeographical history of the ninespine stickleback in North America have focused on a limited set of morphological traits, some of which are likely subject to widespread convergent evolution, thereby potentially obscuring relationships among populations. In this study, we used genetic information from both mitochondrial DNA (mtDNA) sequences and nuclear microsatellite markers to determine the phylogenetic relationships among ninespine stickleback populations. We found that ninespine sticklebacks in North America probably dispersed from at least three glacial refugia-the Mississippi, Bering, and Atlantic refugia-not two as previously thought. However, by applying a molecular clock to our mtDNA data, we found that these three groups diverged long before the most recent glacial period. Our new phylogeny serves as a critical framework for examining the evolution of derived traits in this species, including adaptive phenotypes that evolved multiple times in different lineages. In particular, we inferred that loss of the pelvic (hind fin) skeleton probably evolved independently in populations descended from each of the three putative North American refugia.

SUMMARY Domestic pigeons are spectacularly diverse and exhibit variation in more traits than any other bird species [1]. In The Origin of Species, Charles Darwin repeatedly calls attention to the striking variation among domestic pigeon breeds – generated by thousands of years of artificial selection on a single species by human breeders – as a model for the process of natural divergence among wild populations and species [2]. Darwin proposed a morphology-based classification of domestic pigeon breeds [3], but the relationships among major groups of breeds and their geographic origins remain poorly understood [4, 5]. We used a large, geographically diverse sample of 361 individuals from 70 domestic pigeon breeds and two free-living populations to determine genetic relationships within this species. We found unexpected relationships among phenotypically divergent breeds that imply convergent evolution of derived traits in several breed groups. Our findings also illuminate the geographic origins of breed groups in India and the Middle East, and suggest that racing breeds have made substantial contributions to feral pigeon populations.

No abstract

Feral pigs (Sus scrofa) are an invasive species in Australia. Their negative impact on conservation values has been demonstrated, and they are controlled in many areas in the rangelands of Australia. However, they are usually controlled over small, often ad hoc management units (MUs), and previous research has revealed that these MUs can be inadequate. Understanding feral pig population structuring can aid in the design of appropriate MUs. This study documents an approach to improving MUs for feral pig control in the rangelands of Australia. Feral pigs from a 500,000 km 2 region were genotyped with 13 polymorphic markers. Genetic analyses were used to identify population structure. Identified sub-populations were then related to geographical and environmental gradients with geographical information systems, regression analysis and with canonical correspondence analysis. Five sub-populations were identified. These were moderately differentiated, with relatively high-migration rates. Two sub-populations in drier, lower elevation areas overlapped, due to extensive migration, probably along the large, inland rivers and flood plains. Sub-populations in higher rainfall environments appeared less likely to migrate. Sub-population differentiation was also dependant on distance, indicating isolation by distance was present. A case study applying an adaptive MU to a previously controlled area is presented. Generally, however, MUs for feral pig control for natural resource protection and endemic disease eradication in the rangelands should take into account geographical size, but also geographic features, especially major rivers in low-rainfall areas.