[1] Changes in the amplitude and phasing of seasonal events (phenology) can affect the functioning of marine ecosystems. Phenology plays a particularly critical role in eastern boundary ecosystems, which are driven largely by the seasonal cycle of coastal upwelling. Here we develop and describe a set of indicators that quantify the timing, evolution, intensity, and duration of coastal upwelling in the California Current large marine ecosystem (CCLME). There is significant interannual variability in upwelling characteristics during 1967-2007, with extended periods of high (1970s, 1998-2004) and low (1980 -1995) seasonallyintegrated upwelling and a trend towards a later and shorter upwelling season in the northern CCLME. El Niño years were characterized by delayed and weak upwelling in the central CCLME. Understanding the causes and ecosystem consequences of phenological changes in coastal upwelling is critical, as climate models project significant variability in the amplitude and phase of coastal upwelling under varying climate change scenarios.

Climate change and increased variability and intensity of climate events, in combination with recovering protected species populations and highly capitalized fisheries, are posing new challenges for fisheries management. We examine socio-ecological features of the unprecedented 2014-2016 northeast Pacific marine heatwave to understand the potential causes for record numbers of whale entanglements in the central California Current crab fishery. We observed habitat compression of coastal upwelling, changes in availability of forage species (krill and anchovy), and shoreward distribution shift of foraging whales. We propose that these ecosystem changes, combined with recovering whale populations, contributed to the exacerbation of entanglements throughout the marine heatwave. In 2016, domoic acid contamination prompted an unprecedented delay in the opening of California's Dungeness crab fishery that inadvertently intensified the spatial overlap between whales and crab fishery gear. We present a retroactive assessment of entanglements to demonstrate that cooperation of fishers, resource managers, and scientists could mitigate future entanglement risk by developing climate-ready fisheries approaches, while supporting thriving fishing communities.

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The California Current System represents a confluence of different water masses originating in the subarctic, subtropical, and tropical eastern Pacific. Variations in their relative influence can alter regional biogeochemistry and ecosystem structure. We perform an optimum multiparameter analysis on historical hydrographic data to quantify the spatiotemporal variability of water mass contributions to the California Current. Within the pycnocline, a strong cross‐shore gradient in the primary water mass source reflects the dominant advective pathways within the California Current and California Undercurrent. The El Niño Southern Oscillation imparts variability in the relative contributions and depth structure of source waters, allowing stronger upwelling during La Niña to more effectively tap nutrient‐rich, oxygen‐poor waters originating in the eastern tropical North Pacific. This regional water mass history provides context for understanding the drivers and pathways of biogeochemical variability in the California Current and demonstrates that oceanic changes occurring far afield can have regionally heterogeneous impacts.

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Analysis of monthly coastal upwelling intensities revealed two seasonal and biologically relevant upwelling 'modes' in the California Current Ecosystem (CCE). The first mode reflected upwelling during the summer months and was characterized by low-frequency (multidecadal) processes, including significant (Po0.01) linear trends at some latitudes. In contrast, the second mode reflected wintertime upwelling and was defined by higher-frequency variability associated with the North Pacific High and El Niñ o Southern Oscillation events. These modes were compared with multidecadal time series of splitnose rockfish (Sebastes diploproa) otolith growth, yelloweye rockfish (S. ruberrimus) otolith growth, Chinook salmon (Oncorhynchus tshawytscha) scale growth, and indices of Cassin's auklet (Ptychoramphus aleuticus) and common murre (Uria aalge) reproduction in the central-northern CCE. In redundancy and correlation analyses, salmon growth and Cassin's auklet fledgling success associated with the summer upwelling mode while all other time series associated with the winter upwelling mode, indicating that CCE biology was differentially sensitive to these seasonal upwelling patterns. Thus, upwelling occurred in unrelated seasonal modes with contrasting trends, atmospheric forcing mechanisms, and impacts on the biology of the CCE, underscoring the importance of seasonality when evaluating ecosystem response to climate variability and change.

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