The biogeochemical conditions at the sediment-water interface and along the water column near the discharge of the Santa Marta sewage outfall (SMSO) were studied during the non upwelling (NUPW) and upwelling (UPW) seasons by sedimentary properties and benthic metabolism measurements, as well as, by the implementation of a coupled 3D hydrodynamic-ecological model (AEM3D). Sediment properties (organic matter quantity, C, N and P pools and δ 13 C, δ 15 N and redox potential) and benthic metabolism (aerobic respiration, denitrification, nitrate ammonification and nutrient recycling) were analyzed in four stations located in the proximity and 100, 750 and 1800 m far from the untreated wastewater effluent discharge in both seasons in the Santa Marta Coastal Area (SMCA). From each site, sediment cores were collected between 20 and 30 m depth. Then, the nutrient fluxes were measured in the laboratory via dark incubations; sequentially to fluxes denitrification and dissimilative nitrate reduction to ammonium were measured via the r-IPT (Isotope Pairing Tecnnique). The results indicate that the sediments trace the impact of the outfall (at 750 m and 1800 m with a contribution of terrestrial organic carbon of ~ 40 and ~ 20%, respectively). The results suggest significantly higher sediment oxygen demands (SOD) in the outfall vicinity, as well as a suppression of denitrification and increments in the ammonia nitrogen release through disassimilatory reduction of nitrate to ammonium (DNRA), which was increased during the UPW season.On the other hand, AEM3D model was applied to analyze the seasonal variations of water physicochemical and biological parameters in SMAC under two different nutrient and organic matter loads from wastewater outfall (flow-rate of 1.0 m 3 s -1 and 2.5 m 3 s -1 ) and along the NUPW and UPW season. The model was set up, calibrated and validated based on benthic metabolic measurements carried out within the simulation period, satellite-derived chlorophyll-a (Chl-a) and sea surface temperature (SST) maps, HYCOM database and field and literature water quality data. The model was able to reproduce the magnitude and timing of complex dynamics and fast transitions of temperature, nutrients, and phytoplankton, including the time and duration of stratification and mixing periods during the NUPW and UPW seasons. The model was also able to capture the effect of fertilization from upwelling and from the outfall plume. The wind field was the main driver of nearshore hydrodynamics and the outfall plume dispersion. The shortest average residence times IV of the outfall plume (3.7 ± 0.4 days) corresponded to the period of highest upwelling intensity.Temperature, light intensity and nutrients were the factors that limited phytoplankton growth. The plume concentrations of TOC, TP and PO4 3increased slightly under two scenarios of different wastewater loading. The phytoplankton growth was limited in both NUPW and UPW seasons due to large changes in temperature and advection and mixing in the coastal area, resulting in lar...

The combination of biogeochemical methods and molecular techniques has the potential to uncover the black-box of the nitrogen (N) cycle in bioturbated sediments. Advanced biogeochemical methods allow the quantification of the process rates of different microbial processes, whereas molecular tools allow the analysis of microbial diversity (16S rRNA metabarcoding) and activity (marker genes and transcripts) in biogeochemical hot-spots such as the burrow wall or macrofauna guts. By combining biogeochemical and molecular techniques, we analyzed the role of tube-dwelling Chironomus plumosus (Insecta, Diptera) larvae on nitrification and nitrate reduction processes in a laboratory experiment with reconstructed sediments. We hypothesized that chironomid larvae stimulate these processes and host bacteria actively involved in N-cycling. Our results suggest that chironomid larvae significantly enhance the recycling of ammonium (80.5 ± 48.7 µmol m −2 h −1 ) and the production of dinitrogen (420.2 ± 21.4 µmol m −2 h −1 ) via coupled nitrification-denitrification and the consumption of water column nitrates. Besides creating oxygen microniches in ammonium-rich subsurface sediments via burrow digging and ventilation, chironomid larvae serve as hot-spots of microbial communities involved in N-cycling. The quantification of functional genes showed a significantly higher potential for microbial denitrification and nitrate ammonification in larvae as compared to surrounding sediments. Future studies may further scrutinize N transformation rates associated with intimate macrofaunal-bacteria associations.

The Curonian Lagoon, the largest in Europe, suffers from nuisance cyanobacterial blooms during summer, probably triggered by unbalanced nutrient availability. However, nutrient delivery to this system was never analysed in detail. During 2012–2016, we analysed the monthly discharge, nutrient loads, and ecological stoichiometry at the closing section of the Nemunas River, the main nutrient source to the lagoon. The aim of this study was to investigate seasonal and annual variations of nitrogen (N), silica (Si), and phosphorous (P) with respect to discharge, climatic features, and historical trends. The nutrient loads varied yearly by up to 50% and their concentrations underwent strong seasonality, with summer N and Si limitation. The river discharge (16 ± 4 km3·yr−1) was lower than the historical average (21.8 km3·yr−1). Changes in agricultural practices resulted in similar N export from the river watershed compared to historical data (1986–2002), while sewage treatment plant improvements led to a ~60% decrease of P loads. This work contributes new data to the scattered available information on the most important nutrient source to the Curonian Lagoon. Further P reduction is needed to avoid unbalanced dissolved inorganic nitrogen and phosphorus (DIN:DIP~10) ecological stoichiometry in summer, which may stimulate undesired cyanobacterial blooms.

In shallow‐water sediments, the combined action of microphytobenthos and bioturbating fauna may differentially affect benthic nutrient fluxes and exert a bottom‐up control of pelagic primary production. In many cases, the effects of microphytobenthos and macrofauna on nutrient cycling were studied separately, ignoring potential synergistic effects. We measured the combined effects of microphytobenthos and chironomid larvae on sediment–water fluxes of gas (O2, TCO2 and N2) and nutrients (NH4+, NO3−, NO2−, PO43− and SiO2) in shallow‐water sediments of a hypertrophic freshwater lagoon. Fluxes were measured in the light and in the dark in reconstructed sediments with low (L = 600 ind/m2), high (H = 1,800 ind/m2) and no (C) addition of chironomid larvae, after 3 weeks of pre‐incubation under light/dark regime to allow for microalgal growth. Besides flux measurements, pore water nutrient (NH4+, PO43− and SiO2) and dissolved metal concentrations (Fe2+ and Mn2+) were analysed and diffusive fluxes were calculated. Chironomid larvae increased sediment heterotrophy, by augmenting benthic O2 demand and TCO2 and N2 dark production. However, on a daily basis, treatments C and L were net O2 producing and N2 sinks while treatment H was net O2 consuming and N2 producing. All treatments were net C sink regardless of chironomid density. Microphytobenthos always affected benthic nutrient exchange, as significantly higher uptake or lower efflux was measured in the light compared with dark incubations. Theoretical inorganic N, P and Si demand by benthic microalgae largely exceeded both dark effluxes of NH4+, PO43− and SiO2 and their net uptake in the light, suggesting the relevance of N‐fixation, water column NO3− and solid‐phase associated P and Si as nutrient sources to benthic algae. Chironomid larvae had a minor effect on inorganic N and P fluxes while they significantly stimulated inorganic Si regeneration. Their bioturbation activity significantly altered pore water chemistry, with a major reduction in nutrient (highest for NH4+ and lowest for SiO2) and metal concentration. Underlying mechanisms are combinations of burrow ventilation and bioirrigation with stimulation of element‐specific processes as coupled nitrification–denitrification, co‐precipitation and inhibition of anaerobic paths such as Fe3+ or Mn4+ reduction or re‐oxidation of their end products. The combined activity of benthic algae and chironomid larvae may significantly attenuate internal nutrient recycling in shallow eutrophic ecosystems, and contribute to the control of pelagic primary production.

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The Curonian Lagoon is Europe's largest lagoon and one of the most seriously impacted by harmful blooms of cyanobacteria. Intensive studies over the past 20 years have allowed us to identify the major drivers determining the composition and spatial extent of hyperblooms in this system. We summarize and discuss the main outcomes of these studies and provide an updated, conceptual scheme of the multiple interactions between climatic and hydrologic factors, and their influence on internal and external processes that promote cyanobacterial blooms. Retrospective analysis of remote sensed images demonstrated the variability of blooms in terms of timing, extension and intensity, suggesting that they occur only under specific circumstances. Monthly analysis of nutrient loads and stoichiometry from the principal tributary (Nemunas River) revealed large interannual differences in the delivery of key elements, but summer months were always characterized by a strong dissolved inorganic N (and Si) limitation, that depresses diatoms and favors the dominance of cyanobacteria. Cyanobacteria blooms occurred during high water temperatures, long water residence time and low-wind conditions. The blooms induce transient (night-time) hypoxia, which stimulates the release of iron-bound P, producing a positive feedback for blooms of N-fixing cyanobacteria. Consumermediated nutrient recycling by dreissenid mussels, chironomid larvae, cyprinids and large bird colonies, may also affect P availability, but their role as drivers of cyanobacteria blooms is understudied.

Bivalves are ubiquitous filter-feeders able to alter ecosystems functions. Their impact on nitrogen (N) cycling is commonly related to their filter-feeding activity, biodeposition, and excretion. A so far understudied impact is linked to the metabolism of the associated microbiome that together with the host constitute the mussel’s holobiont. Here we investigated how colonies of the invasive zebra mussel (Dreissena polymorpha) alter benthic N cycling in the shallow water sediment of the largest European lagoon (the Curonian Lagoon). A set of incubations was conducted to quantify the holobiont’s impact and to quantitatively compare it with the indirect influence of the mussel on sedimentary N transformations. Zebra mussels primarily enhanced the recycling of N to the water column by releasing mineralized algal biomass in the form of ammonium and by stimulating dissimilatory nitrate reduction to ammonium (DNRA). Notably, however, not only denitrification and DNRA, but also dinitrogen (N2) fixation was measured in association with the holobiont. The diazotrophic community of the holobiont diverged substantially from that of the water column, suggesting a unique niche for N2 fixation associated with the mussels. At the densities reported in the lagoon, mussel-associated N2 fixation may account for a substantial (and so far, overlooked) source of bioavailable N. Our findings contribute to improve our understanding on the ecosystem-level impact of zebra mussel, and potentially, of its ability to adapt to and colonize oligotrophic environments.

Coastal waters have strong gradients in dissolved organic matter (DOM) quantity and characteristics, originating from terrestrial inputs and autochthonous production. Enclosed seas with high freshwater input therefore experience high DOM concentrations and gradients from freshwater sources to more saline waters. The brackish Baltic Sea experiences such salinity gradients from east to west and from river mouths to the open sea. Furthermore, the catchment areas of the Baltic Sea are very diverse and vary from sparsely populated northern areas to densely populated southern zones. Coastal systems vary from enclosed or open bays, estuaries, fjords, archipelagos and lagoons where the residence time of DOM at these sites varies and may control the extent to which organic matter is biologically, chemically or physically modified or simply diluted with transport off-shore. Data of DOM with simultaneous measurements of dissolved organic (DO) nitrogen (N), carbon (C) and phosphorus (P) across a range of contrasting coastal systems are scarce. Here we present data from the Roskilde Fjord, Vistula and Öre estuaries and Curonian Lagoon; four coastal systems with large differences in salinity, nutrient concentrations, freshwater inflow and catchment characteristics. The C:N:P ratios of DOM of our data, despite high variability, show site specific significant differences resulting largely from differences residence time. Microbial processes seemed to have minor effects, and only in spring did uptake of DON in the Vistula and Öre estuaries take place and not at the other sites or seasons. Resuspension from sediments impacts bottom waters and the entire shallow water column in the Curonian Lagoon. Finally, our data combined with published data show that land use in the catchments seems to impact the DOC:DON and DOC:DOP ratios of the tributaries most.