Submarine canyons are major geomorphic features of continental margins around the world. Several recent multidisciplinary projects focused on the study of canyons have considerably increased our understanding of their ecological role, the goods, and services they provide to human populations, and the impacts that human activities have on their overall ecological condition. Pressures from human activities include fishing, dumping of land-based mine tailings, and oil and gas extraction. Moreover, hydrodynamic processes of canyons enhance the down-canyon transport of litter. The effects of climate change may modify the intensity of currents. This potential hydrographic change is predicted to impact the structure and functioning of canyon communities as well as affect nutrient supply to the deep-ocean ecosystem. This review not only identifies the ecological status of canyons, and current and future issues for canyon conservation, but also highlights the need for a better understanding of anthropogenic impacts on canyon ecosystems and proposes other research required to inform management measures to protect canyon ecosystems.

Cold-water coral (CWC) habitats can form complex structures which provide refuge, nursery grounds and physical support for a diversity of other living organisms, but despite their ecological significance, CWCs are still vulnerable to human pressures such as fishing, pollution, ocean acidification and global warming Providing coherent and representative conservation of vulnerable marine ecosystems including CWCs is one of the aims of the Marine Protected Areas networks being implemented across European seas and oceans under the EC Habitats Directive, the Marine Strategy Framework Directive and the OSPAR Convention. In order to adequately represent ecosystem diversity these initiatives require a standardised habitat classification that organises the variety of biological assemblages and provides consistent and functional criteria to map them across European Seas (Howell 2010). One such classification system, EUNIS, enables a broad level classification of the deep sea based on abiotic and geomorphological features. More detailed lower biotope-related levels are currently underdeveloped , particularly with regards deep-water habitats (>200 m depth). Please note that this is an author-produced PDF of an article accepted for publication following peer review. The definitive publisher-authenticated version is available on the publisher Web site. This paper proposes a hierarchical CWC biotope classification scheme that could be incorporated by existing classification schemes such as EUNIS. The scheme was developed within the EU FP7 project CoralFISH to capture the variability of CWC habitats identified using a wealth of seafloor imagery datasets from across European seas and oceans. Depending on the resolution of the imagery being interpreted, this hierarchical scheme allows data to be recorded from broad CWC biotope categories down to detailed taxonomy-based levels, thereby providing a flexible yet valuable information level for management. The CWC biotope classification scheme identifies 81 biotopes and highlights the limitations of the classification framework and guidance provided by EUNIS, the EC Habitats Directive, OSPAR and FAO; with limited categories for identifying and classifying these CWC habitats.

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Please note that this is an author-produced PDF of an article accepted for publication following peer review. The definitive publisher-authenticated version is available on the publisher Web site. Atlantic, re-establishing a more balanced view that both species and their yet unknown interactions are required to better elucidate the ecology, dynamics and fate of European CWC reefs in a changing environment.

The topographical and hydrological complexity of submarine canyons, coupled with high substratum heterogeneity, make them ideal environments for cold-water coral (CWC) habitats. These habitats, including reefs, are thought to provide important functions for many organisms. The canyons incising the continental slope of the Bay of Biscay have distinct morphological differences from the north to the south. CWCs have been reported from this basin in the late nineteenth century; however, little is known about their present-day distribution, diversity and environmental drivers in the canyons. In this study, the characteristics and distribution of CWC habitats in the submarine canyons of the Bay of Biscay are investigated. Twenty-four canyons and three locations between adjacent canyons were sampled using a Remotely Operated Vehicle (ROV) or a towed camera system. Acquired images were annotated for habitat type (using the CoralFISH classification system), substrate cover and coral identification. Furthermore, the influence of hydrological factors and geomorphology on the CWC distribution was investigated. Eleven coral habitats, formed by 62 morphotypes of scleractinians, gorgonians, antipatharians and seapens, inhabiting hard and/or soft substrate, were observed. The distribution patterns were heterogenous at regional and local scales; the south Bay of Biscay and the southeastern flank favored soft substrate habitats. Biogenic and hard substrate habitats supported higher coral diversities than soft substrate habitats and had similar species compositions. A higher coral species turnover characterized soft substrate habitats. Substrate type was the most important driver of the patterns in both distribution and composition. Observations of coral reefs on steeper areas in the canyons and coral rubble on flatter areas on the interfluve/upper slope support the hypothesis that canyons serve as refuges, being less accessible to trawling, although natural causes may also contribute to the explanation of this distribution pattern. The results of this study fed into a proposal of a Natura 2000 network in the Bay of Biscay where management plans are rare.