Flows of water, soil, litter, and anthropogenic materials in and around rivers lead to the mixing of their resident microbial communities and subsequently to a resultant community distinct from its precursors. Consideration of these events through a new conceptual lens, namely, community coalescence, could provide a means of integrating physical, environmental, and ecological mechanisms to predict microbial community assembly patterns better in these habitats. Here, we review field studies of microbial communities in riverine habitats where environmental mixing regularly occurs, interpret some of these studies within the community coalescence framework and posit novel hypotheses and insights that may be gained in riverine microbial ecology through the application of this concept. Particularly in the face of a changing climate and rivers under increasing anthropogenic pressures, knowledge about the factors governing microbial community assembly is essential to forecast and/or respond to changes in ecosystem function. Additionally, there is the potential for microbial ecology studies in rivers to become a driver of theory development: riverine systems are ideal for coalescence studies because regular and predictable environmental mixing occurs. Data appropriate for testing community coalescence theory could be collected with minimal alteration to existing study designs.
S U M M A R YCephalosporium maydis infects young maize plants easily, but as plants age fewer are infected and none after approx. 50 days from sowing. The mesocotyl and seminal, fibrous and adventitious roots are attacked, especially when there is damage or much inoculum. Most penetration occurs where roots are elongating and emerge from the mesocotyl or from fibrous roots. At first the fungus grows superficially on roots, producing hyphae with short, brown, thick-walled, and swollen cells. After penetrating, the fungus spreads towards the xylem, where it grows slowly at first but after 5 weeks grows faster upwards.C. acremonium causes black-bundle disease of maize. It seems to infect plants growing in unfavourable conditions but the details remain uncertain. The percentage of plants infected was not related to the amount of inoculum and the fungus may not be a primary parasite. The sterile culture filtrate of the fungus produces vascular discoloration and wilt of maize seedlings.
The rate of change (RoC) of environmental drivers matters: biotic and abiotic components respond differently when faced with a fast or slow change in their environment. This phenomenon occurs across spatial scales and thus levels of ecological organization. We investigated the RoC of environmental drivers in the ecological literature and examined publication trends across ecological levels, including prevalent types of evidence and drivers. Research interest in environmental driver RoC has increased over time (particularly in the last decade), however, the amount of research and type of studies were not equally distributed across levels of organization and different subfields of ecology use temporal terminology (e.g. ‘abrupt’ and ‘gradual’) differently, making it difficult to compare studies. At the level of individual organisms, evidence indicates that responses and underlying mechanisms are different when environmental driver treatments are applied at different rates, thus we propose including a time dimension into reaction norms. There is much less experimental evidence at higher levels of ecological organization (i.e. population, community, ecosystem), although theoretical work at the population level indicates the importance of RoC for evolutionary responses. We identified very few studies at the community and ecosystem levels, although existing evidence indicates that driver RoC is important at these scales and potentially could be particularly important for some processes, such as community stability and cascade effects. We recommend shifting from a categorical (e.g. abrupt versus gradual) to a quantitative and continuous (e.g. °C/h) RoC framework and explicit reporting of RoC parameters, including magnitude, duration and start and end points to ease cross‐scale synthesis and alleviate ambiguity. Understanding how driver RoC affects individuals, populations, communities and ecosystems, and furthermore how these effects can feed back between levels is critical to making improved predictions about ecological responses to global change drivers. The application of a unified quantitative RoC framework for ecological studies investigating environmental driver RoC will both allow cross‐scale synthesis to be accomplished more easily and has the potential for the generation of novel hypotheses.
We investigated the effect of biochar type on plant performance and soil nitrogen (N) transformations in mesocosms representing an organic lettuce (Lactuca sativa) production system. Five biochar materials were added to a silt loam soil: Douglas fir wood pyrolyzed at 410 °C (W410), Douglas fir wood pyrolyzed at 510 °C (W510), pine chip pyrolyzed at 550 °C (PC), hogwaste wood pyrolyzed between 600 and 700 °C (SWC), and walnut shell gasified at 900 °C (WS). Soil pH and cation exchange capacity were significantly increased by WS biochar only. Gross mineralization increased in response to biochar materials with high H/C ratio (i.e., W410, W510, and SWC), which can be favorable for organic farming systems challenged by insufficient N mineralization during plant growth. Net nitrification was increased by W510, PC, and WS without correlating with the abundance of ammonia oxidizing gene (amoA). Increases in N transformation rates did not translate into increases in plant productivity or leaf N content. WS biochar increased the abundance of amoA and nitrite reductase gene (nirK), while SWC biochar decreased the abundance of amoA and nitrous oxide gene (nosZ). Decreases in N 2 O emissions were only observed in soil amended with W510 for 3 days out of the 42-day growing season without affecting total cumulative N 2 O fluxes. This suggests that effects of biochar on decreasing N 2 O emissions may be transient, which compromise biochar's potential to be used as a N 2 O mitigation strategy in organic systems. Overall, our results confirm that different biochar materials can distinctively affect soil properties and N turnover.
The competitive saprophytic ability (CSA) of Cephalasporium maydis was smaller at 30 "C when measured by the agar-plate modification than by the original Cambridge method. The agar-plate method suggested that C. maydis was a less competitive saprophyte than C. acremonium although both were low in CSA.C. acremonium grows and sporulates well on organic and synthetic media. C. maydis grows faster but is more exacting nutritionally and is less able to decompose cellulose or maize straw than C. acremonium. Neither fungus produced pectolytic culture filtrates and both were susceptible to antibiotics produced by soil micro-organisms.C. maydis survived on maize straw much longer than C. acremonium. In field soils C. maydis colonized and survived in supplemented wheat bran poorly and not below the top 20 cm of soil.
When methane-producing microbial communities are mixed experimentally, the resulting community is dominated by the community with the greatest resource-use efficiency. These results suggest a degree of community cohesion, or the maintenance of that initial community in the mix.
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