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This study examined diversity and habitat characteristics for bycatch assemblages in two different types of fishing (drifting fish aggregating devices sets and sets made on school of tunas) in the eastern Pacific Ocean (20 • S-30 • N and 70 • -150 • W) between 2005 and 2011 using biodiversity metrics and Generalized Additive Models. Bycatch information was based on data collected by onboard observers covering more than 80% of the purse seine fishing trips. Our results suggest that diversity and habitat characteristics of the bycatch assemblages differ depending of the fishing mode. Thus, diversity was mostly explained by area and set type; being higher in fish aggregating devices (FAD) sets than School sets. Concretely, diversity seems to be directly related with the equatorial upwelling and the front system in FAD sets and with the Costa Rica Dome and the coastal upwelling of Panama induced by wind jets in School sets. Among environmental variables, temperature and chlorophyll were the most important predictors to describe the diversity of the bycatch assemblages. This work has investigated multiple indicators related to the bycatch assemblages and their habitat, which could be helpful for the development of an Ecosystem Approach to Fishery Management (EAFM).

Tropical tuna support some of the largest and most valuable artisanal and industrial fisheries worldwide, conducted to a large degree with Fish Aggregating Devices (FADs). Yellowfin, bigeye and skipjack are the main tuna species found in mixed aggregations around FADs and they are simultaneously encircled by the purse seining operation. One of the key challenges that purse seine fleets fishing with drifting FADs face in all oceans is to be able to target species in healthy condition such as skipjack, while reducing impacts on bigeye and yellowfin in areas where there is a need to reduce fishing pressure on these species. The present paper explores a technical solution for selective fishing at FADs by means of acoustic equipment used by purse seiners. Acoustic frequency response of skipjack and bigeye tuna were determined at 38, 120 and 200 kHz. Skipjack showed stronger response at higher frequencies. On the contrary, bigeye showed stronger responses at lower frequencies. The robust pattern shown in frequency responses of the two species demonstrates the potential to predict abundance and species proportions based on purely acoustic measures. The paper also addresses the conditions that need to be met to successfully apply this technology for selective fishing as well as other uses of direct acoustic observations to support tuna conservation.

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The impact of human activities such as fishing has been identified as a main factor in diversity loss in the open ocean. This paper studies the diversity patterns and environmental characteristics of the bycatch assemblages in Fish Aggregating Devices (FADs) and Free School sets (sets made on schools of tuna) from the tropical tuna purse seine fishery in the eastern Atlantic Ocean (35°W–15°E and 20°N–15°S). Data were collected from scientific observer programmes carried out between 2003 and 2011 on board Spanish and French fleets. The results showed different structure and diversity patterns of the bycatch assemblages depending on the fishing mode, with higher number of species and diversity found in FAD sets than in Free School sets. Bycatch assemblages showed preferences for specific oceanographic characteristics of the Atlantic Ocean, such as the equatorial and seasonal coastal upwelling systems, the Cape Lopez front system and the Guinea dome. The type of set and sea surface temperature play an important role to describe the diversity patterns of these species. These results confirm the importance of integrating different methods to study the marine ecosystem towards the correct implementation of the Ecosystem Approach to Fishery Management (EAFM).