The development of sensitive and versatile techniques to detect protein-protein interactions in vivo is important for understanding protein functions. The previously described techniques, fluorescence resonance energy transfer and bimolecular fluorescence complementation, which are used widely for protein-protein interaction studies in plants, require extensive instrumentation. To facilitate protein-protein interaction studies in plants, we adopted the luciferase complementation imaging assay. The amino-terminal and carboxyl-terminal halves of the firefly luciferase reconstitute active luciferase enzyme only when fused to two interacting proteins, and that can be visualized with a low-light imaging system. A series of plasmid constructs were made to enable the transient expression of fusion proteins or generation of stable transgenic plants. We tested nine pairs of proteins known to interact in plants, including Pseudomonas syringae bacterial effector proteins and their protein targets in the plant, proteins of the SKP1-Cullin-F-box protein E3 ligase complex, the HSP90 chaperone complex, components of disease resistance protein complex, and transcription factors. In each case, strong luciferase complementation was observed for positive interactions. Mutants that are known to compromise protein-protein interactions showed little or much reduced luciferase activity. Thus, the assay is simple, reliable, and quantitative in detection of protein-protein interactions in plants.Noncovalent interactions among proteins are vital for all aspects of cellular processes. Thus, the identification and characterization of interacting proteins are key to our understanding of protein functions. A plethora of techniques have been developed to detect protein-protein interactions in vitro and in vivo (Piehler, 2005). The most widely used among these techniques is the yeast two-hybrid assay, which is ideal for largescale screening for interacting proteins and the construction of protein interactomes (Fields and Song, 1989;Li et al., 2004). However, the yeast two-hybrid assay detects protein-protein interactions under heterologous conditions, and results must be validated by assays under physiological conditions. Examination of protein-protein interactions under physiological conditions is often technically demanding and requires tedious procedures. For example, the co-immunoprecipitation assay requires specific antibodies; lengthy procedures that are influenced by parameters such as schemes for protein extraction, binding, and washing; and expertise of individuals performing the experiment. Thus, the results are often variable from laboratory to laboratory. Tandem affinity purification represents a more advanced technique primarily designed to identify new proteins in a protein complex in a native state (Puig et al., 2001;Rohila et al., 2006).The development of reporter-based in vivo proteinprotein interaction assays, such as fluorescence resonance energy transfer (FRET;Ha et al., 1996;Heim and Tsien, 1996;Mahajan et al., 1998), the ...

Pathogen/microbe-associated molecular patterns (PAMPs/MAMPs) trigger plant immunity that forms the first line inducible defenses in plants. The regulatory mechanism of MAMP-triggered immunity, however, is poorly understood. Here, we show that Arabidopsis thaliana transcription factors ETHYLENE INSENSITIVE3 (EIN3) and ETHYLENE INSENSITIVE3-LIKE1 (EIL1), previously known to mediate ethylene signaling, also negatively regulate PAMP-triggered immunity. Plants lacking EIN3 and EIL1 display enhanced PAMP defenses and heightened resistance to Pseudomonas syringae bacteria. Conversely, plants overaccumulating EIN3 are compromised in PAMP defenses and exhibit enhanced disease susceptibility to Pseudomonas syringae. Microarray analysis revealed that EIN3 and EIL1 negatively control PAMP response genes. Further analyses indicated that SALICYLIC ACID INDUCTION DEFICIENT2 (SID2), which encodes isochorismate synthase required for pathogen-induced biosynthesis of salicylic acid (SA), is a key target of EIN3 and EIL1. Consistent with this, the ein3-1 eil1-1 double mutant constitutively accumulates SA in the absence of pathogen attack, and a mutation in SID2 restores normal susceptibility in the ein3 eil1 double mutant. EIN3 can specifically bind SID2 promoter sequence in vitro and in vivo. Taken together, our data provide evidence that EIN3/EIL1 directly target SID2 to downregulate PAMP defenses.

Arabidopsis NONHOST1 (NHO1) is required for limiting the in planta growth of nonhost Pseudomonas bacteria but completely ineffective against the virulent bacterium Pseudomonas syringae pv. tomato DC3000. However, the molecular basis underlying this observation remains unknown. Here we show that NHO1 is transcriptionally activated by flagellin. The nonhost bacterium P. syringae pv. tabaci lacking flagellin is unable to induce NHO1, multiplies much better than does the wild-type bacterium, and causes disease symptoms on Arabidopsis. DC3000 also possesses flagellin that is potent in NHO1 induction, but this induction is rapidly suppressed by DC3000 in a type III secretion systemdependent manner. Direct expression of DC3000 effectors in protoplasts indicated that at least nine effectors, HopS1, HopAI1, HopAF1, HopT1-1, HopT1-2, HopAA1-1, HopF2, HopC1, and AvrPto, are capable of suppressing the flagellin-induced NHO1 expression. One of the effectors, HopAI1, is conserved in both animal and plant bacteria. When expressed in transgenic Arabidopsis plants, HopAI1 promotes growth of the nonpathogenic hrpL ؊ mutant bacteria. In addition, the purified phytotoxin coronatine, a known virulence factor of P. syringae, suppresses the flagellin-induced NHO1 transcription. These results demonstrate that flagellin-induced defenses play an important role in nonhost resistance. A remarkable number of DC3000 virulence factors act in the plant cell by suppressing the species level defenses, and that contributes to the specialization of DC3000 on Arabidopsis.type III secretion system ͉ virulence ͉ pathogen-associated molecular patterns ͉ basal defense ͉ coronatine N onhost resistance refers to resistance shown by an entire plant species to a specific parasite (1). This resistance is expressed by every plant toward the majority of potential phytopathogens and differs from the cultivar-level resistance conditioned by gene-forgene interactions (2, 3). Plant defenses can be induced by ''general elicitors'' of pathogen or plant origin, including oligosaccharides, lipids, polypeptides, and glycoproteins (4). However, a role of these elicitors in plant disease resistance in a natural setting is often difficult to establish, because plants' responses to elicitors do not differentiate resistant and susceptible plants. Many of the elicitors are now known as pathogen-associated molecular patterns (PAMPs). The best-characterized PAMP known to activate innate immunity in plants is flagellin from Pseudomonas bacteria (5). A conserved N-terminal peptide of flagellin, flg22, is a potent elicitor of defense responses in tomato and Arabidopsis (5, 6). In Arabidopsis, flg22 is perceived by FLS2, a receptor-like kinase that activates downstream events through a MAP kinase cascade (7,8). Pretreatment of Arabidopsis with flg22 peptide not only globally induces defense gene expression, but also protects plants from subsequent infection of the virulent DC3000 (9). Arabidopsis plants lacking FLS2 exhibit enhanced disease susceptibility to DC3000 under certain ...