This paper proposes an automatic method for artefact removal and noise elimination from scalp electroencephalogram recordings (EEG). The method is based on blind source separation (BSS) and supervised classification and proposes a combination of classical and news features and classes to improve artefact elimination (ocular, high frequency muscle and ECG artefacts). The role of a supplementary step of wavelet denoising (WD) is explored and the interactions between BSS, denoising and classification are analyzed. The results are validated on simulated signals by quantitative evaluation criteria and on real EEG by medical expertise. The proposed methodology successfully rejected a good percentage of artefacts and noise, while preserving almost all the cerebral activity. The "denoised artefact-free" EEG presents a very good improvement compared with recorded raw EEG: 96% of the EEGs are easier to interpret.
Genomic signal processing (GSP) methods which convert DNA data to numerical values have recently been proposed, which would offer the opportunity of employing existing digital signal processing methods for genomic data. One of the most used methods for exploring data is cluster analysis which refers to the unsupervised classification of patterns in data. In this paper, we propose a novel approach for performing cluster analysis of DNA sequences that is based on the use of GSP methods and the K-means algorithm. We also propose a visualization method that facilitates the easy inspection and analysis of the results and possible hidden behaviors. Our results support the feasibility of employing the proposed method to find and easily visualize interesting features of sets of DNA data.
Genomic signal processing (GSP) refers to the use of digital signal processing (DSP) tools for analyzing genomic data such as DNA sequences. A possible application of GSP that has not been fully explored is the computation of the distance between a pair of sequences. In this work we present GAFD, a novel GSP alignment-free distance computation method. We introduce a DNA sequence-to-signal mapping function based on the employment of doublet values, which increases the number of possible amplitude values for the generated signal. Additionally, we explore the use of three DSP distance metrics as descriptors for categorizing DNA signal fragments. Our results indicate the feasibility of employing GAFD for computing sequence distances and the use of descriptors for characterizing DNA fragments.
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