Plant genomes generated by Sanger and Next Generation Sequencing (NGS) have provided insight into species diversity and evolution. However, Sanger sequencing is limited in its applications due to high cost, labor intensity, and low throughput, while NGS reads are too short to resolve abundant repeats and polyploidy, leading to incomplete or ambiguous assemblies. The advent and improvement of long-read sequencing by Third Generation Sequencing (TGS) methods such as PacBio and Nanopore have shown promise in producing high-quality assemblies for complex genomes. Here, we review the development of sequencing, introducing the application as well as considerations of experimental design in TGS of plant genomes. We also introduce recent revolutionary scaffolding technologies including BioNano, Hi-C, and 10× Genomics. We expect that the informative guidance for genome sequencing and assembly by long reads will benefit the initiation of scientists’ projects.

The plant cytoskeleton is a highly dynamic component of plant cells and mainly based on microtubules (MTs), and actin filaments (AFs). The important functions of dynamic cytoskeletal networks have been indicated for almost every intracellular activity, from cell division to cell movement, cell morphogenesis and cell signal transduction. Recent studies have also indicated a close relationship between the plant cytoskeleton and plant salt stress tolerance. Salt stress is a significant factor that adversely affects crop productivity and quality of agricultural fields worldwide. The complicated regulatory mechanisms of plant salt tolerance have been the subject of intense research for decades. It is well accepted that cellular changes are very important in plant responses to salt stress. Because the organization and dynamics of cytoskeleton may play an important role in enhancing plant tolerance through various cell activities, study on salt stress-induced cytoskeletal network has been a vital topic in the subject of plant salt stress tolerance mechanisms. In this article, we introduce our recent work and review some current information on the dynamic changes and functions of cytoskeletal organization in response to salt stress. The accumulated data point to the existence of highly dynamic cytoskeletal arrays and the activation of complex cytoskeletal regulatory networks in response to salt stresses. The important role played by cytoskeleton in mediating the plant cell's response to salt stresses is particularly emphasized.

Waterlogging limits plant growth and yield. We investigated the effects of waterlogging stress on leaf photosynthesis, chlorophyll fluorescence, antioxidant capacity, chloroplast ultrastructure, and yield of sorghum (Sorghum bicolor L.). Two sorghum cultivars, Jinuoliang01 (JN01, waterlogging-tolerant cultivar) and Jinza31 (JZ31, waterlogging-sensitive cultivar) were subjected to a 12-d waterlogging treatment; the plants of the two cultivars which were not subjected to waterlogging were used as control (CK), respectively. After waterlogging treatment, the yield of JZ31 and JN01 decreased by 72.3 and 52.9%, the net photosynthetic rate of JZ31 and JN01 decreased by 61.8 and 39.0%, respectively, compared with CK. The chlorophyll content was higher, PSII was more stable, and chloroplast structure remained more intact in JN01 than that in JZ31 under waterlogging. This was due to the higher peroxidase and catalase activities and nonphotochemical quenching in JN01 compared to JZ31. Therefore, greater antioxidant capacity and nonphotochemical quenching could alleviate damage to PSII and chloroplast ultrastructure to maintain higher net photosynthetic rate under waterlogging. This may be an important waterlogging-tolerance mechanism of sorghum.

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