Diverse element toxicities (or deficiencies) that are exacerbated during waterlogging are proposed as a major reason why waterlogging tolerance at one site is often not replicated at another. Recommendations for germplasm improvement for waterlogging tolerance include use of inductively coupled plasma analyses of soils and plants.

Six wheat varieties with different tolerance to waterlogging were studied in acidic soil (pH 4.5), neutral soil, and potting mix (pH 6.7-7.8) under controlled conditions. Waterlogging for 49 d reduced shoot dry weight by 48% to 85% compared with drained treatments. The ranking of varieties for waterlogging changed under different soils, and this change explains why waterlogging tolerance of these varieties may vary in different environments. In waterlogged acidic soil, shoot concentrations of aluminum (Al), manganese (Mn), and iron (Fe) increased by two-to 10-fold, and in some varieties they were above critical concentrations compared with plants in drained soil. These elements decreased or remained the same in shoots of plants grown in waterlogged neutral soil. Marginal nitrogen (N) deficiency was induced in most varieties in all soil types. The results support the importance of screening in soils from the target environment for accurate germplasm characterization for waterlogging tolerance.

Waterlogging results in high shoot concentrations of iron (Fe), aluminum (Al), and manganese (Mn) in wheat grown in acidic soil. The verification of this observation in several acidic soils, development of screening techniques, and identification of genotypes differing in tolerance made it possible to test whether tolerance of ion toxicities improves performance of wheat in waterlogged acid soils. Six wheat varieties selected for tolerance/intolerance of Al, Mn, and Fe were grown in three acidic soils (pH CaCl2 4.1-4.3) with or without waterlogging for 40 d. In terms of relative shoot dry weight, Al-, Mn-, and Fe-tolerant genotypes tolerated waterlogging better, outperforming intolerant genotypes by 35%, 53%, and 32%, respectively, across the soils. The Al-tolerant genotype had up to 1.8-fold better root growth than the intolerant genotype under waterlogging. Waterlogging increased DTPA-extractable soil Mn (71%) and Fe (89%), and increased shoot Fe (up to 7.6-fold) and Al (up to 5.9-fold) for different genotypes and soils. The Al-tolerant genotype maintained lower tissue concentrations of Al as compared to intolerant genotypes during waterlogging. Waterlogging delayed crop development but distinctly less so in the tolerant than in the intolerant genotypes, thus jeopardizing the capacity of intolerant genotypes to produce yield in Mediterranean climates with dry finish of the season. Pyramiding multiple ion tolerances into current wheat varieties with desirable agronomic and quality characteristics to enhance their performance under waterlogged acid soils should be considered.

Nitrogen (N) is a major nutrient needed to attain optimal grain yield (GY) in all environments. Nitrogen fertilisers represent a significant production cost, in both monetary and environmental terms. Developing genotypes capable of taking up N early during development while limiting biomass production after establishment and showing high N-use efficiency (NUE) would be economically beneficial. Genetic variation in NUE has been shown previously. Here we describe the genetic characterisation of NUE and identify genetic loci underlying N response under different N fertiliser regimes in a bread wheat population of doubled-haploid lines derived from a cross between two Australian genotypes (RAC875 × Kukri) bred for a similar production environment. NUE field trials were carried out at four sites in South Australia and two in Western Australia across three seasons. There was genotype-by-environment-by-treatment interaction across the sites and also good transgressive segregation for yield under different N supply in the population. We detected some significant Quantitative Trait Loci (QTL) associated with NUE and N response at different rates of N application across the sites and years. It was also possible to identify lines showing positive N response based on the rankings of their Best Linear Unbiased Predictions (BLUPs) within a trial. Dissecting the complexity of the N effect on yield through QTL analysis is a key step towards elucidating the molecular and physiological basis of NUE in wheat.

Genetic variation has been observed in both protein concentration in wheat grain and total protein content (protein yield). Here we describe the genetic analysis of variation for grain protein in response to nitrogen (N) supply and locate significant genomic regions controlling grain protein components in a spring wheat population. In total, six N use efficiency (NUE) field trials were carried out for the target traits in a sub-population of doubled haploid lines derived from a cross between two Australian varieties, RAC875 and Kukri, in Southern and Western Australia from 2011 to 2013. Twenty-four putative Quantitative Trait Loci (QTL) for protein-related traits were identified at high and low N supply and ten QTL were identified for the response to N for the traits studied. These loci accounted for a significant proportion of the overall effect of N supply. Several of the regions were co-localised with grain yield QTL and are promising targets for further investigation and selection in breeding programs.

High concentrations of manganese (Mn), iron (Fe), and aluminium (Al) induced in waterlogged acid soils are a potential constraint for growing sensitive wheat cultivars in waterlogged-prone areas of Western Australian wheat-belt. Tackling induced ion toxicities by a genetic approach requires a good understanding of the existing variability in ion toxicity tolerance of the current wheat germplasm. A bioassay for tolerance to high concentration of Mn in wheat was developed using Norquay (Mn-tolerant), Columbus (Mn-intolerant), and Cascades (moderately tolerant) as control genotypes and a range of MnCl 2 concentrations (2, 250, 500, 750, 1000, 2000, and 3000 lM Mn) at pH 4.8 in a nutrient solution. Increasing solution Mn concentration decreased shoot and root dry weight and intensified the development of toxicity symptoms more in the Mnintolerant cv. Columbus than in Norquay and Cascades. The genotypic discrimination based on relative shoot (54% to 79%) and root dry weight (17% to 76%), the development of toxicity symptoms (scores 2 to 4) and the shoot Mn concentration (1428 to 2960 mg kg -1 ) was most pronounced at 750 lM Mn. Using this concentration to screen 60 Australian and 6 wheat genotypes from other sources, a wide variation in relative root dry weight (11% to 95%), relative shoot dry weight (31% to 91%), toxicity symptoms (1.5 to 4.5), and shoot Mn concentration (901 to 2695 mg kg -1 ) were observed. Evidence suggests that Mn tolerance has been introduced into Australian wheat through CIMMYT germplasm having "LERMO-ROJO" within their parentage, preserved either through a co-tolerance to Mn deficiency or a process of passive selection for Mn tolerance. Cultivars Westonia and Krichauff expressed a high level of tolerance to both Mn toxicity and deficiency, whereas Trident and Janz (reputed to be tolerant to Mn deficiency) were intolerant to Mn toxicity, suggesting that tolerance to excess and shortage of Mn are different, but not mutually exclusive traits. The co-tolerance for Mn and Al in ET8 (an Al-tolerant nearisogenic line) and the absence of Mn tolerance in BH1146 (an Al-tolerant genotype from Brazil) limits the effectiveness of these indicator genotypes to environments where only one constraint is induced. Wide variation of Mn tolerance in Australian wheat cultivars will enable breeding genotypes for the genetic solution to the Mn toxicity problem.

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High concentration of reduced iron (Fe 2?