The hydroxyl radical is an important atmospheric oxidant, and a significant source of its production occurs through alkene ozonolysis. This takes place via a cycloaddition reaction and subsequent fragmentation to form an energized carbonyl oxide (for example, CH3CHOO), known as a Criegee intermediate, which can then either react with another atmospheric species or decay and, in doing so, produce the hydroxyl radical. Here, we examine the dissociation dynamics of a prototypical Criegee intermediate by characterizing the translational and internal energy distributions of the OH radical products, which reflect critical configurations along the reaction pathway. Experimentally, the kinetic energy release to OH products is ascertained through velocity map imaging. Theoretically, quasi-classical trajectories are performed on a new full-dimensional, ab initio potential energy surface. Both experiment and theory show that most of the available energy flows into internal excitation of the vinoxy products. The isotropic angular distribution of OH fragments indicates that dissociation occurs in ≥2 ps, in agreement with theory.
The twin-arginine transport (Tat) system translocates folded proteins across the bacterial cytoplasmic or chloroplast thylakoid membrane of plants. The Tat system in most Gram-positive bacteria consists of two essential components, the TatA and TatC proteins. TatA is considered to be a bifunctional subunit, which can form a protein-conducting channel by self-oligomerization and can also participate in substrate recognition. However, the molecular mechanism underlying protein translocation remains elusive. Herein, we report the solution structure of the TatA(d) protein from Bacillus subtilis by NMR spectroscopy, the first structure of the Tat system at atomic resolution. TatA(d) shows an L-shaped structure formed by a transmembrane helix and an amphipathic helix, while the C-terminal tail is largely unstructured. Our results strongly support the postulated topology of TatA(d) in which the transmembrane helix is inserted into the lipid bilayer while the amphipathic helix lies at the membrane-water interface. Moreover, the structure of TatA(d) revealed the structural importance of several conserved residues at the hinge region, thus shedding new light on further elucidation of the protein transport mechanism of the Tat system.
Highlights d Analysis of conformational dynamics throughout the M2R using 13 CH 3 -ε-methionine NMR d Ligands with various efficacies for G protein and arrestin signaling were examined d Each ligand stabilized a distinct conformation of the M2R d There is no clear linear correlation between ligand efficacy and chemical shifts
UV excitation of jet-cooled CH2OO X(1)A' to the excited B(1)A' electronic states results in dissociation to two spin-allowed product channels: H2CO X(1)A1 + O (1)D and H2CO a(3)A″ + O (3)P. In this study, the higher energy H2CO a(3)A″ + O (3)P channel is characterized by velocity map imaging and UV action spectroscopy, in both cases utilizing 2 + 1 resonance enhanced multiphoton ionization detection of O (3)P products, which complements a prior experimental study on the lower energy H2CO X(1)A1 + O (1)D channel [Lehman et al., J. Chem. Phys. 139, 141103 (2013)]. Anisotropic angular distributions indicative of rapid dissociation are obtained at 330 and 350 nm, along with broad and unstructured total kinetic energy distributions that provide insight into the internal excitation of the H2CO a(3)A″ co-fragment. A harmonic normal mode analysis points to significant vibrational excitation of the CH2 wag and C-O stretch modes of the H2CO a(3)A″ fragment upon dissociation. At each UV wavelength, the termination of the kinetic energy distribution reveals the energetic threshold for the H2CO a(3)A″ + O (3)P product channel of ca. 76 kcal mol(-1) (378 nm) and also establishes the dissociation energy from CH2OO X(1)A' to H2CO X(1)A1 + O(1)D products of D0 ≤ 49.0 ± 0.3 kcal mol(-1), which is in accord with prior theoretical studies. The threshold for the H2CO a(3)A″ + O (3)P channel is also evident as a more rapid falloff on the long wavelength side of the O (3)P action spectrum as compared to the previously reported UV absorption spectrum for jet-cooled CH2OO [Beames et al., J. Am. Chem. Soc. 134, 20045 (2012)]. Modeling suggests that the O (3)P yield increases uniformly from 378 to 300 nm.
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