Permian-Triassic boundary (PTB) sections from isolated carbonate platforms in the Nanpanjiang Basin of south China contain Upper Permian skeletal packstones with diverse open-marine fossils overlain by a 7-15 m thick boundary horizon composed of calcimicrobial framestone constructed by globular to tufted, calcified cyanobacteria similar to Renalcis. The framestone contains interbeds of limegrainstone with abundant thin-shelled bivalves and brachiopods. The overlying Lower Triassic strata contain microgastropod lime-packstones followed by a thick succession of thin-bedded lime-mudstones. The PTB event horizon is interpreted to occur at the top of the packstone containing diverse, open-marine fauna and Palaeofusulina and coincident with the abrupt change to calcimicrobial framestone lacking Permian macrofossils. The conformable biostratigraphic boundary occurs at the first appearance of Hindeodus parvus within the basal meter of the calcimicrobial framestone. Intensively studied PTB sections in south China, such as the GSSP at Meishan, primarily are condensed sections from deep-water, basin environments that contain a thin (Ͻ 30 cm) boundary horizon of claystone and lime-mudstone or marl. The sections reported herein are fundamentally different in that they consist of shallow-marine carbonate facies, contain a thick boundary horizon composed of calcimicrobial framestone, and lack evidence of an abrupt shift in depositional environment or water depth. The calcimicrobial framestone boundary horizon occurs in all of the isolated carbonate platforms in the Nanpanjiang Basin. A similar microbial facies has been found in the basal Triassic H. parvus zone in the Sichuan Basin and in Japan. Distribution of the calcimicrobial framestone suggests that it may represent an anomalous oceanic event that affected a vast area of the equatorial eastern Tethys and Panthalassa during and/or immediately following the end-Permian mass extinction. The persistence of similar calcimicrobial framestone horizons into the Upper Scythian suggests that detrimental environmental conditions associated with the extinction persisted until the end of the Scythian. Further study of these sections promises to provide constraints on causes of the extinction and the environments in the aftermath.

Understanding the population structure and linkage disequilibrium in an association panel can effectively avoid spurious associations and improve the accuracy in association mapping. In this study, one hundred and fifty eight elite cotton (Gossypium hirsutum L.) germplasm from all over the world, which were genotyped with 212 whole genome-wide marker loci and phenotyped with an disease nursery and greenhouse screening method, were assayed for population structure, linkage disequilibrium, and association mapping of Verticillium wilt resistance. A total of 480 alleles ranging from 2 to 4 per locus were identified from all collections. Model-based analysis identified two groups (G1 and G2) and seven subgroups (G1a–c, G2a–d), and differentiation analysis showed that subgroup having a single origin or pedigree was apt to differentiate with those having a mixed origin. Only 8.12% linked marker pairs showed significant LD (P<0.001) in this association panel. The LD level for linked markers is significantly higher than that for unlinked markers, suggesting that physical linkage strongly influences LD in this panel, and LD level was elevated when the panel was classified into groups and subgroups. The LD decay analysis for several chromosomes showed that different chromosomes showed a notable change in LD decay distances for the same gene pool. Based on the disease nursery and greenhouse environment, 42 marker loci associated with Verticillium wilt resistance were identified through association mapping, which widely were distributed among 15 chromosomes. Among which 10 marker loci were found to be consistent with previously identified QTLs and 32 were new unreported marker loci, and QTL clusters for Verticillium wilt resistanc on Chr.16 were also proved in our study, which was consistent with the strong linkage in this chromosome. Our results would contribute to association mapping and supply the marker candidates for marker-assisted selection of Verticillium wilt resistance in cotton.

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