Ardisia crenata Sims, one of the most widely distributed Ardisia in the world, is an important ornamental and medicinal plant species. Using seven polymorphic nuclear microsatellite loci, we studied the genetic variation of 20 natural populations of A. crenata across its distribution center in south China. Significant deviation from the Hardy–Weinberg equilibrium in all populations and at all loci were detected, and the fixation index was high (FIS= 0.725), indicating that inbreeding may be dominant in the mixed mating system of this self‐compatible species. The average genetic diversity within populations was relatively low (HS= 0.321). There was significant genetic differentiation among populations (FST= 0.583), which may have resulted from a high level of inbreeding and a low level of gene flow. Ardisia crenata in south China can be roughly divided into an eastern group and a western group, consistent with the floristic division of the Sino‐Himalayan forest subkingdom and the Sino‐Japanese forest subkingdom. There may be separated glacial refugia in each region.

Genetic comparisons between native and invasive populations of a species can provide insights into its invasion history information, which is useful for guiding management and control strategies. The coral berry Ardisia crenata was introduced to Florida last century as a cultivated ornament plant, and has since spread widely throughout the southern regions of the USA. Previously, the genetic variation among 20 natural populations of A. crenata across its distribution center in southern China was quantified using seven microsatellite markers. Here we expand on that work by additionally sampling individuals from four other native populations in Taiwan and Japan, and from five invasive populations in the USA. We also examined the results from one chloroplast intergenic spacer region (trnF‐trnL) in all 29 populations. Our aim is to identify the invasion source and subsequent history of the species’ spread throughout the southern USA. We observed lower genetic diversity in the invasive populations based on both microsatellite and chloroplast markers. Our data show that the invasive populations can be clustered with native populations in southeastern China, inferring this region as the geographic origin of A. crenata cultivars invading the USA. We further classified invasive individuals into invasive I and invasive II clusters. Nantou in Taiwan and Xihu in mainland China are the most closely related populations to those, which identify the former as potential sources for host‐specific control agents. Our results, combined with the known introduction records, suggest that A. crenata was first multiply introduced into Florida and then secondarily colonized Louisiana and Texas from Florida.

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