Ligase chain reaction (LCR) is a recently developed technique that employs a thermostable ligase and allowsfor the discrimination of DNA sequences differing in only a single base pair. The method has been adapted and applied to differentiation of bla SHV genes. We have developed an LCR typing method to characterize point mutations in genes for SHV-derived extended-spectrum -lactamases with four different sets of biotinylated LCR primers. To evaluate the applicability of the current technique, we tested seven Escherichia coli strains producing SHV-1, SHV-2, SHV-2a, SHV-3, SHV-4, SHV-5, and SHV-12. With the LCR typing, seven SHV genes can be distinguished according to their incorporating point mutations. In an attempt to characterize SHV -lactamases by LCR typing in clinical isolates, 46 strains carrying bla SHV genes (32 Klebsiella pneumoniae, 10 Enterobacter cloacae, and 4 E. coli) were subjected to antibiotic susceptibility testing, isoelectric focusing, and LCR typing. LCR typing allowed the characterization of -lactamases, and genotypes obtained by LCR typing were in accordance with phenotypes such as antibiotic resistance profile and pI value of -lactamase. Therefore, we concluded that LCR typing may permit defining the SHV families with simplicity and reliability and can be applied to the detailed characterization and molecular epidemiology of SHV-type -lactamases.The SHV-type -lactamases represent one of the most clinically significant families of plasmid-encoded -lactamases. Point mutations in the nucleotide sequences of the structural genes for the SHV-type -lactamases can broaden their substrate spectrum towards all -lactams except cephamycins and carbapenems (12,28). Detection of such mutations usually requires sequencing of the genes, which is time-consuming and technically demanding. Other approaches used to study the -lactamases of SHV-group have limitations: isoelectric focusing (IEF) is inadequate since the same pI can correspond to different -lactamases and characterization of enzymatic substrate profiles does not allow one to differentiate between closely related enzymes.Here, we report a new strategy for differentiation of bla SHV genes based on a nonradioactive ligase chain reaction (LCR) method. LCR employs a thermostable ligase and allows for the discrimination of DNA sequences differing in only a single base pair (4). In the LCR, a target DNA sequence is denatured at 94°C and the four primers anneal to their complementary strands at 60°C. Then, thermostable ligase only ligates primers that are perfectly complementary to their target sequence and hybridize directly adjacent to each other. Because the oligonucleotide products from one round may serve as substrates during the next round, the signal is amplified exponentially, analogous to PCR amplification. A single-base mismatch at the oligonucleotide junction will not be amplified and is, therefore, distinguished. Thus, LCR allows for the detection and discrimination of parental and mutated nucleotide sequences of SHV enzymes. We ...