The complete genomic sequence of Pseudomonas syringae pv. syringae B728a (Pss B728a) has been determined and is compared with that of P. syringae pv. tomato DC3000 (Pst DC3000). The two pathovars of this economically important species of plant pathogenic bacteria differ in host range and other interactions with plants, with Pss having a more pronounced epiphytic stage of growth and higher abiotic stress tolerance and Pst DC3000 having a more pronounced apoplastic growth habitat. The Pss B728a genome (6.1 Mb) contains a circular chromosome and no plasmid, whereas the Pst DC3000 genome is 6.5 mbp in size, composed of a circular chromosome and two plasmids. Although a high degree of similarity exists between the two sequenced Pseudomonads, 976 protein-encoding genes are unique to Pss B728a when compared with Pst DC3000, including large genomic islands likely to contribute to virulence and host specificity. Over 375 repetitive extragenic palindromic sequences unique to Pss B728a when compared with Pst DC3000 are widely distributed throughout the chromosome except in 14 genomic islands, which generally had lower GC content than the genome as a whole. Content of the genomic islands varies, with one containing a prophage and another the plasmid pKLC102 of Pseudomonas aeruginosa PAO1. Among the 976 genes of Pss B728a with no counterpart in Pst DC3000 are those encoding for syringopeptin, syringomycin, indole acetic acid biosynthesis, arginine degradation, and production of ice nuclei. The genomic comparison suggests that several unique genes for Pss B728a such as ectoine synthase, DNA repair, and antibiotic production may contribute to the epiphytic fitness and stress tolerance of this organism.virulence genes ͉ epiphyte ͉ plant pathogen

Dehalococcoides ethenogenes strain 195 (DE195) was grown in a sustainable syntrophic association with Desulfovibrio vulgaris Hildenborough (DVH) as a co-culture, as well as with DVH and the hydrogenotrophic methanogen Methanobacterium congolense (MC) as a tri-culture using lactate as the sole energy and carbon source. In the co-and tri-cultures, maximum dechlorination rates of DE195 were enhanced by approximately three times (11.0±0.01 lmol per day for the co-culture and 10.1 ± 0.3 lmol per day for the tri-culture) compared with DE195 grown alone (3.8 ± 0.1 lmol per day). Cell yield of DE195 was enhanced in the co-culture (9.0 ± 0.5 Â 10 7 cells per lmol Cl À released, compared with 6.8 ± 0.9 Â 10 7 cells per lmol Cl À released for the pure culture), whereas no further enhancement was observed in the tri-culture (7.3±1.8 Â 10 7 cells per lmol Cl À released). The transcriptome of DE195 grown in the co-culture was analyzed using a wholegenome microarray targeting DE195, which detected 102 significantly up-or down-regulated genes compared with DE195 grown in isolation, whereas no significant transcriptomic difference was observed between co-and tri-cultures. Proteomic analysis showed that 120 proteins were differentially expressed in the co-culture compared with DE195 grown in isolation. Physiological, transcriptomic and proteomic results indicate that the robust growth of DE195 in co-and tri-cultures is because of the advantages associated with the capabilities of DVH to ferment lactate to provide H 2 and acetate for growth, along with potential benefits from proton translocation, cobalamin-salvaging and amino acid biosynthesis, whereas MC in the tri-culture provided no significant additional benefits beyond those of DVH.

Xylella fastidiosa is a xylem-inhabiting bacterium that causes Pierce's disease (PD) of grapevine. Growth rates of X. fastidiosa in a rich liquid medium were determined by culturing methods at various temperatures. The slope of the regression line between the points of 18 and 28°C was similar to that reported for Escherichia coli between 12 and 30°C and for Erwinia amylovora between 9 and 18°C. For three PD strains, two almond strains, and an oleander strain, X. fastidiosa grew fastest at 28°C but did not grow at 12°C. Grape seedlings kept at 5, 10, 17, or 25°C for 18 days, beginning 2 weeks postinoculation at 25°C, had 230-fold lower populations of X. fastidiosa when kept at 5°C, but populations did not change significantly over time at the other temperatures. In planta populations of X. fastidiosa decreased 3 days after placing the seedlings at 5 and 37°C, and subsequent samples yielded no culturable bacteria at 37°C. Based on in vitro and in planta studies, it appears that temperatures between 25 and 32°C may be critical for the epidemiology of Pierce's disease because of its rapid growth rate at these temperatures, whereas temperatures below 12 to 17°C and above 34°C may affect the survival of X. fastidiosa in plants.