Aim: Attention has increasingly been focused on the floristic variation within forests of the Amazon Basin. Variations in species composition and diversity are poorly understood, especially in Amazonian floodplain forests. We investigated tree species composition, richness and alpha diversity in the Amazonian white-water (varzea) forest, looking particularly at: (1) the flood-level gradient, (2) the successional stage (stand age), and (3) the geographical location of the forests. Location: Eastern Amazonia, central Amazonia, equatorial western Amazonia and the southern part of western Amazonia. Methods: The data originate from 16 permanent varzea forest plots in the central and western Brazilian Amazon and in the northern Bolivian Amazon. In addition, revised species lists of 28 varzea forest inventories from across the Amazon Basin were used. Most important families and species were determined using importance values. Floristic similarity between plots was calculated to detect similarity variations between forest types and over geographical distances. To check for spatial diversity gradients, alpha diversity (Fisher) of the plots was correlated with stand age, longitudinal and latitudinal plot location, and flood-level gradient. Results: More than 900 flood-tolerant tree species were recorded, which indicates that Amazonian varzea forests are the most species-rich floodplain forests worldwide. The most important plant families recorded also dominate most Neotropical upland forests, and c. 31% of the tree species listed also occur in the uplands. Species distribution and diversity varied: (1) on the flood-level gradient, with a distinct separation between low-varzea forests and high-varzea forests, (2) in relation to natural forest succession, with species-poor forests in early stages of succession and species-rich forests in later stages, and (3) as a function of geographical distance between sites, indicating an increasing alpha diversity from eastern to western Amazonia, and simultaneously from the southern part of western Amazonia to equatorial western Amazonia. Main conclusions: The east-to-west gradient of increasing species diversity in varzea forests reflects the diversity patterns also described for Amazonian terra firme. Despite the fine-scale geomorphological heterogeneity of the floodplains, and despite high disturbance of the different forest types by sedimentation and erosion, varzea forests are dominated by a high proportion of generalistic, widely distributed tree species. In contrast to high-varzea forests, where floristic dissimilarity increases significantly with increasing distance between the sites, low-varzea forests can exhibit high floristic similarity over large geographical distances. The high varzea may be an important transitional zone for lateral immigration of terra firme species to the floodplains, thus contributing to comparatively high species richness. However, long-distance dispersal of many low-varzea trees contributes to comparatively low species richness in highly flooded low...

AS UNIDADES de conservação ainda são um dos instrumentos mais eficientes na promoção da proteção e conservação da biodiversidade na Amazônia. As unidades de uso sustentável têm se mostrado cada vez mais importantes no cenário atual. Dentre os modelos propostos hoje para criação e gestão destas unidades, o Modelo de Reservas de Desenvolvimento Sustentável mostra-se viável e bastante bem-sucedido. Neste trabalho são apresentados os aspectos mais centrais da formulação deste modelo e exemplos oriundos do seu principal representante, a Reserva de Desenvolvimento Sustentável Mamirauá (RDSM), além de considerações acerca do sucesso e validação desse modelo por meio de sua replicação para outras áreas na Amazônia.
PROTECTED areas are still one of the most effective tools to promote bio-diversity protection and conservation in the Amazon. The importance of protected areas of sustainable use in the present scenario is increasing. Among the proposed conservation models for protected areas of sustainable use, the Sustainable Development Reserve Model is not only viable, but extremely successful. In the present paper the main aspects of such model are presented, with some illustration from it most well known representative, the Mamirauá Sustainable Development Reserve (MSDR), and with some discussion regarding the success and validation of the model through its replication for other sites in the Amazon

The squirrel monkey, Saimiri, is a pan-Amazonian Pleistocene radiation. We use statistical phylogeographic methods to create a mitochondrial DNA-based timetree for 118 squirrel monkey samples across 68 localities spanning all Amazonian centers of endemism, with the aim of better understanding (1) the effects of rivers as barriers to dispersal and distribution; (2) the area of origin for modern Saimiri; (3) whether ancestral Saimiri was a lowland lake-affiliated or an upland forest taxa; and (4) the effects of Pleistocene climate fluctuation on speciation. We also use our topology to help resolve current controversies in Saimiri taxonomy and species relationships. The Rondônia and Inambari centers in the southern Amazon were recovered as the most likely areas of origin for Saimiri. The Amazon River proved a strong barrier to dispersal, and squirrel monkey expansion and diversification was rapid, with all speciation events estimated to occur between 1.4 and 0.6Ma, predating the last three glacial maxima and eliminating climate extremes as the main driver of squirrel monkey speciation. Saimiri expansion was concentrated first in central and western Amazonia, which according to the "Young Amazon" hypothesis was just becoming available as floodplain habitat with the draining of the Amazon Lake. Squirrel monkeys also expanded and diversified east, both north and south of the Amazon, coincident with the formation of new rivers. This evolutionary history is most consistent with a Young Amazon Flooded Forest Taxa model, suggesting Saimiri has always maintained a lowland wetlands niche and was able to greatly expand its range with the transition from a lacustrine to a riverine system in Amazonia. Saimiri vanzolinii was recovered as the sister group to one clade of Saimiri ustus, discordant with the traditional Gothic vs. Roman morphological division of squirrel monkeys. We also found paraphyly within each of the currently recognized species: S. sciureus, S. ustus, and S. macrodon. We discuss evidence for taxonomic revision within the genus Saimiri, and the need for future work using nuclear markers.

Arantes CC, Castello L, Stewart DJ, Cetra M, Queiroz HL. Population density, growth and reproduction of arapaima in an Amazonian river‐floodplain. Ecology of Freshwater Fish 2010: 19: 455–465. © 2010 John Wiley & Sons A/S Abstract –  Compensatory density effects are key features of fish population dynamics that remain poorly understood in tropical river‐floodplains. We investigated possible compensatory growth and reproductive processes for a river‐floodplain population of Arapaima sp., an extinction‐prone fish species of South America. Body growth was studied through analysis of ring patterns on the scales, and size and age at sexual maturity was studied through analysis of female gonads. Growth and maturity were compared for unmanaged conditions with relatively low population density (in 1990s) versus managed conditions with markedly higher density (in 2005–2006); between 1999 and 2005–2006, abundance increased 7.3 fold. Results contradict theoretical expectations for slower growth and delayed reproduction at higher population density. Total lengths of arapaima at low population density were significantly shorter for age classes 1–5 compared with lengths of those age classes at high population density (ancova, P < 0.0001 for both slopes and intercepts). Total length at 50% maturity (L50) only declined about 4% with increasing density (e.g., 164 cm at low density vs. 157 cm at high density). Apparent faster growth at high density and only a slight change in size at maturity resulted in fishes spawning at an earlier age with high density conditions (age 3 vs. age 4–5). We hypothesise that these patterns reflect compliance with minimum size limits of catch during the high density (managed) situation, where there was no harvest of immature fishes. Compliance with minimum size limits, thus, may have led to faster average body growth rate and earlier reproduction, which has greatly promoted population recovery.

Aim Our aim was to examine gracile capuchin (Cebus) and robust capuchin monkey (Sapajus) diversification, with a focus on recent Sapajus expansion within Amazonia. We wanted to reconstruct the biogeographical history of the clade using statistical methods that model lineages' occupation of different regions over time in order to evaluate recently proposed 'Out of Amazonia' and 'Reinvasion of Amazonia' hypotheses as alternative explanations for the extensive geographical overlap between reciprocally monophyletic gracile (Cebus) and robust (Sapajus) capuchin monkeys.Location Central and South America.Methods We reconstructed a time-calibrated molecular phylogeny for capuchins under Bayesian inference from three mitochondrial genes. We then categorized 12 capuchin clades across four Neotropical centres of endemism and reconstructed the biogeographical history of the capuchin radiation using six models implemented in 'BioGeoBEARS'. We performed a phylogeographical analysis for a robust capuchin clade that spans the Atlantic Forest, Cerrado, Caatinga and Amazonia. ResultsWe find support for a late Miocene vicariant Cebus-Sapajus divergence and a Pleistocene Sapajus invasion of Amazonia from the Atlantic Forest. Our new analyses confirm Sapajus diversified first in the Atlantic Forest, with subsequent range expansion into widespread sympatry with Cebus in Amazonia, as well as multiple expansions into drier savanna-like habitats. We do not find mitochondrial molecular congruence with morphological species distinctions for Sapajus flavius, S. cay, S. macrocephalus, S. libidinosus and S. apella; instead, these five morphological types together form a single widespread clade (Bayesian posterior probability = 1) with geographical substructure and shared ancestry during the Pleistocene.Main conclusions Our results support vicariance dividing ancestral capuchin populations in Amazonia versus the Atlantic Forest, and a Pleistocene 'Amazonian invasion' by Sapajus to explain the present-day sympatry of Cebus and Sapajus.

Summary1. River system dynamics results in ecological heterogeneities that play a central role in maintaining biodiversity in riverine regions. In central Amazonia, large expanses of forest are seasonally flooded by nutrient-rich water (va´rzea forests) or by nutrient-poor water (igapo´forests). Inundation patterns and the nutrient load of floodwaters are perhaps the most important abiotic factors determining spatial ecological variations in lowland Amazonia, and so they are expected to strongly influence the structuring of animal communities. 2. We examined how inundation patterns and water-nutrient load influence the structure of neotropical assemblages of bats, one of the most diverse vertebrate groups in tropical forests. Bat assemblages were sampled with mist nets in central Brazilian Amazonia, across a mosaic of va´rzea, igapo´, and non-flooding nutrient-poor terra firme forests in the low-and high-water seasons.3. An ordination analysis clearly separated the assemblages of the three forest types, demonstrating the structural relevance of both flooding and floodwater-nutrient load. Flooded forests had lower species richness because of the absence or rarity of species that make roosts out of leaves of understorey plants, and of those that feed on fruits of shrubs. Gleaning insectivores, also partly dependent on the understorey, were less abundant in flooded forests, but aerial insectivores more abundant, presumably because they benefited from a less cluttered foraging environment. These differences suggest that flooding affects bat assemblages mostly because it reduces the availability of niches associated with understorey vegetation, which tends to be sparser in flooded forests. 4. Nutrient-rich va´rzea forests had a bat biomass twice that of nutrient-poor igapo´and unflooded forests. This difference was not only mostly due to a greater overall abundance of bats, but also attributable to a disproportionate higher abundance of large-bodied bat species. 5. We concluded that both flooding and floodwater-nutrient load are very important in the structuring of lowland Amazonian bat assemblages, with inundation mostly constraining the species composition of the assemblages, and water-nutrient load mostly influencing the abundance of species. The distinctiveness of bat assemblages associated with flooding emphasizes the need to preserve inundated forests, which are under particular pressure in Amazonia.

Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such “monodominant” forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tree Diversity Network (ATDN). Utilizing a simple defining metric of at least half of the trees ≥ 10 cm diameter belonging to one species, we found only a few occurrences of monodominance in Amazonia, and the phenomenon was not significantly linked to previously hypothesized life history traits such wood density, seed mass, ectomycorrhizal associations, or Rhizobium nodulation. In our analysis, coppicing (the formation of sprouts at the base of the tree or on roots) was the only trait significantly linked to monodominance. While at specific locales coppicing or ectomycorrhizal associations may confer a considerable advantage to a tree species and lead to its monodominance, very few species have these traits. Mining of the ATDN dataset suggests that monodominance is quite rare in Amazonia, and may be linked primarily to edaphic factors.

Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia is best approximated by a logseries with aggregated individuals, where aggregation increases with rarity. By averaging several methods to estimate total richness, we confirm that over 15,000 tree species are expected to occur in Amazonia. We also show that using ten times the number of plots would result in an increase to just ~50% of those 15,000 estimated species. To get a more complete sample of all tree species, rigorous field campaigns may be needed but the number of trees in Amazonia will remain an estimate for years to come.