Purpose: Matrix metalloproteinase 9 (MMP-9) plays critical roles in cancer development and aggression. Nonsynonymous single-nucleotide polymorphisms (SNP) in the functional domain of the MMP-9 gene may influence substrate and inhibitor binding and contribute to cancer predisposition and aggression. Patients and Methods: To test our hypothesis that common nonsynonymous SNPs, R279Q, P574R, and R668Q, in MMP-9 are associated with lung cancer development and metastasis, we conducted a case-control study of 744 patients with incident lung cancer and 747 cancer-free controls in Southeast China. Multivariate logistic regression analysis was used to calculate adjusted odds ratio (OR) and 95% confidence interval (95% CI). Results: We found that compared with the 279QQ genotype, the 279RR genotype was associated with significant elevated risk of lung cancer with metastasis (adjusted OR, 1.79; 95% CI, 1.03-3.08), whereas the 574PR heterozygote and 574PP homozygote had 1.46-fold (95% CI, 0.94-2.26) and 1.69-fold elevated risk (95% CI, 1.10-2.60), respectively, compared with the 574RR genotype. When we examined the combined effect of R279Q and P574R and used the 279R and 574P as the risk alleles, a significantly increased risk of lung cancer was associated with both the genotypes containing ''1 to 2 risk alleles'' (adjusted OR, 2.16; 95% CI, 1.30-3.59) and containing ''>2 risk alleles'' (adjusted OR, 2.44; 95% CI, 1.48-4.03), and it was more pronounced in 290 lung cancer cases with metastasis [adjusted OR, 2.30 (95% CI, 1.09-4.85) for the 1to 2 risk alleles subgroup and adjusted OR, 2.82 (95% CI, 1.35-5.88) for the >2 risk alleles subgroup], compared with those without any risk alleles. However, no overall significant associations were observed between R668Q and lung cancer risk in this study population. Conclusion: These findings indicate that the potentially functional polymorphisms, MMP-9 P574R and R279Q, may confer the biomarker in the occurrence and metastasis of primary lung cancer. Further functional studies including these two genetic variants are warranted to confirm our findings.The extracellular microenvironment is a dynamic entity and provides regulatory signals on an intricate network of pathways that include cell adhesion, differentiation, division, and apoptosis. Therefore, cells with disruption of these pathways may acquire tumorigenic properties, such as loss of contact inhibition, aberrant cell division, and evasion of apoptosis (1). Matrix metalloproteinases (MMP), a family of structurally and functionally related zinc endopeptidases, are essential regulators of the microenvironment of the cell, through their control of extracellular proteolysis, and have been implicated in invasion and metastasis of tumor cells (2 -5). Recent studies on the roles of MMPs revealed that these proteolytic enzymes are involved in the regulation of various cell behaviors, including cancer cell growth, differentiation, apoptosis, migration, invasion, and the regulation of tumor angiogenesis and immune surveillance (6);...