Single nucleotide polymorphisms (SNPs) which represent the most widespread source of sequence variation in genomes, are becoming a routine application in several fields such as forensics, ecology and conservation genetics. Their use, requiring short amplifications, may allow a more efficient genotyping of degraded DNA. We provide the first application of SNP genotyping in an Italian non-invasive genetic monitoring project of the wolf. We compared three different techniques for genotyping SNPs: pyrosequencing, SNaPshot® and TaqMan® Probe Assay in Real-Time PCR. We successively genotyped nine SNPs using the TaqMan Probe Assay in 51 Italian wolves, 57 domestic dogs, 15 wolf x dog hybrids and 313 wolf scats collected in the northern Apennines. The obtained results were used to estimate genetic variability and PCR error rates in SNP genotyping protocols compared to standard microsatellite analysis. We evaluated the cost, laboratory effort and reliability of these different markers and discuss the possible future use of VeraCode, SNPlex and Fluidigm EP1 system in wild population monitoring
A multivariate morphometric investigation was conducted on wings of two parthenogenetic Drosophila mercatorum strains and offspring (F1) of crosses between these parthenogenetic strains with highly inbred sexual individuals of the same species. The parental flies and F1 offspring were reared at three different temperatures: 20, 25, or 28°C. This design allows a comparison of completely homozygous individuals (parental generation) with identical heterozygote offspring (F1), which makes an analysis of phenotypic plasticity of morphometric traits possible, without a potentially confounding effect of genotype-environment interactions, which can increase the phenotypic variability. The same pattern of phenotypic plasticity of wing size between the homozygous parental strains and the heterozygous offspring was found in both strains with an apparent heterotic effect for wing size in the F1 at 25°C. At 20 and 28°C flies from the parental generation had the biggest wings. Phenotypic plasticity of shape was found to be strain dependent. A reduced level of developmental instability (DI) was found in the F1 as compared to the parental strain only in strain 1 reared at 20°C for the wing size and 25°C for the wing shape. For all the other treatments higher DI was found in the F1 when the difference was significant, which is suggestive of outbreeding depression. These findings are difficult to interpret since an apparent heterotic effect of size at 25°C is accompanied by higher DI (though not significant in strain 2) and complex changes in wing shape. Hence, we cannot conclude whether outbreeding lowers or increases the capacity to respond to environmental change via plastic responses and via changes of the level of DI. The degree of change of Kristian Krag and Hans Thomsen have contributed equally. phenotypic plasticity and DI is trait specific, depending on the environment and on the genotypes which are hybridizing.
Climate change poses a serious threat to the existence of many species. The combination of habitat fragmentation and increasing temperatures is of particular concern because it can alter demographic and population genetic processes, which may ultimately lead to extinction. Locomotion is very important in mitigating the negative impacts of these processes by upholding migration and contributing to random mating within and between populations. In the present study, a T‐maze, constituting a relatively complex laboratory assay, is used to investigate whether inbreeding affects the capacity to reach a food source in male Drosophila melanogaster Meigen 1830 (Diptera: Drosophilidae) reared at 20, 25 or 30 °C, respectively. The effects of inbreeding and crossbreeding are highly temperature‐specific. Strong heterosis for the ability to reach food in the maze is observed in flies developed and maintained at 30 °C, whereas inbred flies locate the food significantly faster than crossbreds when reared at 25 °C in four of six runs. No clear pattern is evident in flies reared at 20 °C. The results suggest that complex traits such as locomotor performance in a maze are highly informative in the evaluation and detection of inbreeding depression under different thermal conditions. The effect of inbreeding is most pronounced at high temperature, which is a characteristic of the conditions that many natural populations may have to face under climate change.
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