A series of para-oligophenylene mono-and dicarboxylic acids (R-(C 6 H 4 ) n COOH, n=1-3, R=H,COOH) was studied. Adsorbed on Au(111)/mica modified by an underpotential deposited bilayer of Ag, the self-assembled monolayers (SAMs) were analysed by near edge X-ray absorption fine structure spectroscopy, X-ray photoelectron spectroscopy and scanning tunneling microscopy. In all cases SAMs are formed with molecules adopting an upright orientation and anchored to the substrate by a carboxylate. Except benzoic acid, all SAMs could be imaged at molecular resolution, which revealed highly crystalline layers with a dense molecular packing. The structures of the SAMs are described by a rectangular (5×√3) unit cell for the prevailing phase of the monocarboxylic acids and an oblique (√93×√133) unit cell for the dicarboxylic acids, thus, evidencing a pronounced influence of the second COOH moiety on the SAM structure. Density functional theory calculations suggest that hydrogen bonding between the SAM terminating COOH moieties accounts for the difference. Contrasting other classes of SAMs, the systems studied here are determined by intermolecular interactions whereas molecule-substrate interactions play a secondary role. Thus, eliminating problems arising from the mismatch between the molecular and substrate lattices, coordinatively bonded carboxylic acids on silver should provide considerable flexibility in the design of SAM structures.

Self-assembled monolayers of biphenyl-3,4',5-tricarboxylic acid (BPTCA) on Au(111)/mica substrates modified by under-potential deposited layers of Cu and Ag were studied by scanning tunneling microscopy under ambient conditions as well as by synchrotron based Xray photoelectron spectroscopy and near-edge X-ray absorption fine structure spectroscopy.BPTCA forms distinctly different layers on Ag and Cu due to a pronounced influence of the substrate on the balance of intermolecular and molecule-substrate interactions. On Cu a highly crystalline commensurate row structure is formed, described by a 6×√3 unit cell, a molecular tilt of 45-50° relative to the surface normal, and a bipodal bidentate adsorption geometry. In contrast, incommensurate row structures are formed on Ag which are characterized by significant waves and kinks, a monopodal bidentate adsorption geometry, and a tilt angle of 25-30°. While BPTCA parallels its smaller homologue, benzene-1,3,5-tricarboxylic acid, with regard to the substrate specific monopodal and bipodal adsorption geometries, the preparation conditions for the monolayer on Cu and the film structure on Ag are pronouncedly different. The results are discussed in terms of the steric requirements and molecular symmetry of BPTCA.3

Assembly of 1,3,5-benzenetribenzoic acid (H3BTB) from solution on Au substrates modified by underpotential deposited Ag and Cu layers was studied by near edge X-ray absorption fine structure spectroscopy, X-ray photoelectron spectroscopy and scanning tunneling microscopy. Adsorption of H3BTB on Cu resulted in disordered layers with sporadic occurrence of ordered molecular aggregates. In contrast, highly ordered layers were obtained on Ag which exhibit a pronounced row structure and involve a monopodal bidentate adsorption geometry of the molecules through carboxylate coordinating bonding. The row structure arises from π-stacking of the molecules and is accompanied by hydrogen bonding interactions between the COOH groups of adjacent rows. As a consequence of the geometry of the H3BTB molecule and the dominance of intermolecular over molecule-substrate interactions, the SAM forms an open structure featuring a grooved surface and nanotunnels.

Peekaboo on the nanoscale: exposure to molecules of adamantanecarboxylic acid leaves a layer of benzenetricarboxylic acid seemingly unchanged.

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Highly ordered: a commensurate (5 × 5) overlayer of chloride on top of a (1 × 1) pseudomorphic monolayer of copper.

Monolayers of 4-(2,6-di(1 H-pyrazol-1-yl)pyridine-4-yl)benzoic acid (DPP-BA) on Au substrates modified by an underpotential-deposited bilayer of Ag were studied by X-ray photoelectron spectroscopy (XPS), near edge X-ray absorption fine structure spectroscopy, and scanning tunneling microscopy. Highly crystalline layers are formed with molecules coordinatively bonding to the surface through the carboxylate moiety in a bidentate configuration. The molecules assemble to rows characterized by densely packed upright-orientated DPP units occupying an area of 41 Å. The DPP units adopt a trans-trans conformation as inferred from the N 1s XPS spectra taken at different photon energies. Their alignment alternates between adjacent rows, giving rise to a herringbone pattern. The pronouncedly different structure of the weakly commensurate self-assembled monolayer (SAM) of DPP-BA on Ag compared to the commensurate SAM of a DPP thiol on Au is a manifestation of the shift from substrate-directed assembly in the latter case to assembly dominated by intermolecular interactions in the former case.

Biopolymers are used extensively in the manufacture of porous scaffolds for a variety of biological applications. The surfaces of these scaffolds are often modified to encourage specific interactions such as surface modification of scaffolds to prevent fouling or to promote a cell supportive environment for tissue engineering implants. However, few techniques can effectively characterize the uniformity of surface modifications in a porous scaffold. By filling the scaffold pores through polymer embedding, followed by analysis with imaging time-of-flight secondary ion mass spectrometry (ToF-SIMS), the distribution and composition of surface chemical species though complex porous scaffolds can be characterized. This method is demonstrated on poly(caprolactone) scaffolds modified with a low-fouling plasma-deposited coating from octafluoropropane via plasma enhanced chemical vapor deposition. A gradient distribution of CF/CF is observed for scaffolds plasma treated for 5 min, whereas a 20 min treatment results in more uniform distribution of the surface modification throughout the entire scaffold. The authors expect this approach to be widely applicable for ToF-SIMS analysis of scaffolds modified by multiple plasma processing techniques as well as alternative surface modification approaches.