Interbreeding between hatchery-reared and wild fish, through deliberate stocking or escapes from fish farms, can result in rapid phenotypic and gene expression changes in hybrids, but the underlying mechanisms are unknown. We assessed if one generation of captive breeding was sufficient to generate inter- and/or transgenerational epigenetic modifications in Atlantic salmon. We found that the sperm of wild and captive-reared males differed in methylated regions consistent with early epigenetic signatures of domestication. Some of the epigenetic marks that differed between hatchery and wild males affected genes related to transcription, neural development, olfaction, and aggression, and were maintained in the offspring beyond developmental reprogramming. Our findings suggest that rearing in captivity may trigger epigenetic modifications in the sperm of hatchery fish that could explain the rapid phenotypic and genetic changes observed among hybrid fish. Epigenetic introgression via fish sperm represents a previously unappreciated mechanism that could compromise locally adapted fish populations.

Samples of Ostrea edulis were collected during 1999 and 2000 from five sites in Scotland, and from one site each in Northern Ireland, Ireland, France, The Netherlands and Norway. Samples were scored at four microsatellite loci. Mean numbers of alleles per locus varied from 12·6 to 16·6 and observed heterozygosity per locus ranged from 0·801 to 0·845. Samples derived originally from hatchery seed showed significantly fewer alleles per locus and significantly reduced expected heterozygosity compared with wild populations. However, observed heterozygosity did not differ significantly between the two groups. Significant deficiencies of heterozygotes were present at one or more loci in four of the ten populations sampled and a significant excess of heterozygotes was present at one locus in a hatchery-sourced Scottish population. Genetic distance indices revealed that the Norway population was the most distinct from all others and that hatchery-sourced populations were also relatively distinct from other wild populations. However, genetic subdivision was generally low implying high historical ‘migration’ rates for these populations.

We have constructed a genetic map for a tilapia, Oreochromis niloticus, using DNA markers. The segregation of 62 microsatellite and 112 anonymous fragment length polymorphisms (AFLPs) was studied in 41 haploid embryos derived from a single female. We have identified linkages among 162 (93.1%) of these markers. 95% of the microsatellites and 92% of the AFLPs were linked in the final map. The map spans 704 Kosambi cM in 30 linkage groups covering the 22 chromosomes of this species. Twenty-four of these linkage groups contain at least one microsatellite polymorphism. From the number of markers 15 or fewer cM apart, we estimate a total map length of ~1000–1200 cM. High levels of interference are observed, consistent with measurements in other fish species. This map is a starting point for the mapping of single loci and quantitative traits in cichlid fishes.

Approximately 5000 clones from a partial genomic library of Ostrea edulis DNA were screened with (CA)15 and (GA)15 probes. Fifty‐six positive clones were sequenced, with 24 containing a microsatellite sequence. Primers were designed for 14 loci, and the five most reliably amplifying were developed further. Four of these showed high levels of variability and only one locus (HA21) showed a significant deviation from Hardy–Weinberg expectations, with an excess of homozygotes. These microsatellite DNA markers will be powerful tools for the study of wild and hatchery stocks of this commercially important species.

Biological invasions are important causes of biodiversity loss, particularly in remote islands. Brown trout (Salmo trutta) have been widely introduced throughout the Southern Hemisphere, impacting endangered native fauna, particularly galaxiid fishes, through predation and competition. However, due to their importance for sport fishing and aquaculture farming, attempts to curtail the impacts of invasive salmonids have generally been met with limited support and the best prospects for protecting native galaxiids is to predict where and how salmonids might disperse. We analysed 266 invasive brown trout from 14 rivers and ponds across the Falkland Islands as well as 32 trout from three potential source populations, using a panel of 592 single nucleotide polymorphisms (SNPs) and acoustic tagging, to ascertain their origins and current patterns of dispersal. We identified four genetically distinct clusters with high levels of genetic diversity and low admixture, likely reflecting the different origins of the invasive brown trout populations. Our analysis suggests that many trout populations in the Falklands may have originated from one of the donor populations analysed (River Wey). The highest genetic diversity was observed in the rivers with the greatest number of introductions and diverse origins, while the lowest diversity corresponded to a location without documented introductions, likely colonized by natural dispersal. High levels of gene flow indicated widespread migration of brown trout across the Falkland Islands, likely aided by anadromous dispersal. This is supported by data from acoustically tagged fish, three of which were detected frequently moving between two rivers ~26 km apart. Our results suggest that, without containment measures, brown trout may invade the last remaining refuges for the native endangered Aplochiton spp. We provide new insights into the origin and dispersal of invasive brown trout in the Falkland Islands that can pave the way for a targeted approach to limit their impact on native fish fauna.