challenge to structural biology. The folded domain structures for the scaffold protein PSD-95 were long known but such fragmentary knowledge lacks methods to assemble these pieces. We used single-molecule FRET studies with multi-parameter fluorescence detection [1] and filtered fluorescence correlation spectroscopy [2, 3] to describe the native state ensemble of this canonical scaffold protein. Our approach represents a solution to describing the flexibility in any multi-domain protein from nanoseconds to seconds. The five domains in PSD-95 partitioned into two independent supramodules. Intramolecular interactions were limited to neighboring domains, which did not interact without being tethered. Although MAGUK proteins are flexible, there are conformational preferences encoded in the primary sequence. [1.] McCann, J. J., Zheng, L. Rohrbeck, D., Felekyan, S., Kühnemuth, R., Sutton, R. B., Seidel, C. A. M., Bowen, M. E.; The supertertiary structure of the synaptic MAGuK scaffold proteins is conserved. Proc. Natl. Acad. Sci. USA. 109, 15775-15780 (2012). [2.] Felekyan, S., Kalinin, S., Sanabria, H., Valeri, A., Seidel, C. A. M.; Filtered FCS: Species auto and cross correlation functions highlight binding and dynamics in biomolecules.