Phylobetadiversity is defined as the phylogenetic resemblance between communities or biomes. Analyzing phylobetadiversity patterns among different vegetation physiognomies within a single biome is crucial to understand the historical affinities between them. Based on the widely accepted idea that different forest physiognomies within the Southern Brazilian Atlantic Forest constitute different facies of a single biome, we hypothesize that more recent phylogenetic nodes should drive phylobetadiversity gradients between the different forest types within the Atlantic Forest, as the phylogenetic divergence among those forest types is biogeographically recent. We compiled information from 206 checklists describing the occurrence of shrub/tree species across three different forest physiognomies within the Southern Brazilian Atlantic Forest (Dense, Mixed and Seasonal forests). We analyzed intra-site phylogenetic structure (phylogenetic diversity, net relatedness index and nearest taxon index) and phylobetadiversity between plots located at different forest types, using five different methods differing in sensitivity to either basal or terminal nodes (phylogenetic fuzzy weighting, COMDIST, COMDISTNT, UniFrac and Rao’s H). Mixed forests showed higher phylogenetic diversity and overdispersion than the other forest types. Furthermore, all forest types differed from each other in relation phylobetadiversity patterns, particularly when phylobetadiversity methods more sensitive to terminal nodes were employed. Mixed forests tended to show higher phylogenetic differentiation to Dense and Seasonal forests than these latter from each other. The higher phylogenetic diversity and phylobetadiversity levels found in Mixed forests when compared to the others likely result from the biogeographical origin of several taxa occurring in these forests. On one hand, Mixed forests shelter several temperate taxa, like the conifers Araucaria and Podocarpus. On the other hand, tropical groups, like Myrtaceae, are also very representative of this forest type. We point out to the need of more attention to Mixed forests as a conservation target within the Brazilian Atlantic Forest given their high phylogenetic uniqueness.

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Aim Disentangling the effects of climate and historical factors on biodiversity distribution remains a challenge for biogeographers. Here, we provide an analytical framework to discriminate the contributions of contemporary climate and the biogeographical history of taxa to the geographical distributions of phylogenetic lineages. Furthermore, we evaluate the constraint that the biogeographical history of clades exerts on the association between climate and clade distribution, i.e. the historical legacy of climatic effects. As a case study, we analysed the distributions of amphibian lineages across the Americas. Location The Americas. Methods We tallied the number of amphibian species per genus in each of 262 ecoregions. Each ecoregion was described by the composition of phylogenetic lineages using phylogenetic fuzzy weighting. The composition of amphibian genera and phylogenetic clades represented the distributions of shallow and deep phylogenetic nodes, respectively. We characterized each ecoregion by the biogeographical history of amphibian taxa and its current climate, whose influences on shallow and deep phylogenetic nodes were analysed using variation partitioning analysis. Results The association between climate and the distributions of deep phylogenetic nodes showed a strong historical legacy, although the distribution of amphibian genera was mostly associated with climate. Hyloidea were associated with a Gondwanan origin and higher annual mean temperatures, whereas other clades (e.g. Caudata) were related to a Laurasian origin and higher temperature seasonality. Microhylidae were related to occurrence in the Early Jurassic in Gondwana and recent occurrence in the Neotropics. Main conclusions Biogeographical patterns can be thought of as the net outcome of evolutionary, historical and ecological processes. Although temperature is likely to affect the ecology of amphibians, the effects of climate on the distributions of deep phylogenetic nodes were strongly constrained by the biogeographical history of clades. Nevertheless, local, climatically driven processes are likely to influence the distributions of shallow phylogenetic nodes. The historical biogeography of clades might help to explain the interplay between evolutionary and environmental processes in determining assembly patterns found elsewhere.

The Neotropics, Afrotropics and Madagascar have different histories which have influenced their respective patterns of diversity. Based on current knowledge of these histories, we developed the following predictions about the phylogenetic structure and composition of rainforest tree communities: (Hypothesis 1) isolation of Gondwanan biotas generated differences in phylogenetic composition among biogeographical regions; (H2) major Cenozoic extinction events led to lack of phylogenetic structure in Afrotropical and Malagasy communities; (H3) greater angiosperm diversification in the Neotropics led to greater phylogenetic clustering there than elsewhere; (H4) phylogenetic overdispersion is expected near the Andes due to the co‐occurrence of magnoliids tracking conserved habitat preferences and recently diversified eudicot lineages. Using abundance data of tropical rainforest tree species from 94 communities in the Neotropics, Afrotropics and Madagascar, we computed net relatedness index (NRI) to assess local phylogenetic structure, i.e. phylogenetic clustering vs. overdispersion relative to regional species pools, and principal coordinates of phylogenetic structure (PCPS) to assess variation in phylogenetic composition across communities. We observed significant differences in phylogenetic composition among biogeographical regions (agreement with H1). Overall phylogenetic structure did not differ among biogeographical regions, but results indicated variation from Andes to Amazon. We found widespread phylogenetic randomness in most Afrotropical and all Malagasy communities (agreement with H2). Most of central Amazonian communities were phylogenetically random, although some communities presented phylogenetic clustering (partial agreement with H3). We observed phylogenetic overdispersion near the Andes (agreement with H4). We were able to identify how differences in lineage composition are related to local phylogenetic co‐occurrences across biogeographical regions that have been undergoing different climatic and orographic histories during the past 100 Myr. We observed imprints of the history following Gondwana breakup on phylobetadiversity and local phylogenetic structure of rainforest tree communities in the Neotropics, Afrotropics and Madagascar.

Understanding how species traits evolved over time is the central question to comprehend assembly rules that govern the phylogenetic structure of communities. The measurement of phylogenetic signal (PS) in ecologically relevant traits is a first step to understand phylogenetically structured community patterns. The different methods available to estimate PS make it difficult to choose which is most appropriate. Furthermore, alternative phylogenetic tree hypotheses, node resolution and clade age estimates might influence PS measurements. In this study, we evaluated to what extent these parameters affect different methods of PS analysis, and discuss advantages and disadvantages when selecting which method to use. We measured fruit/seed traits and flowering/fruiting phenology of endozoochoric species occurring in Southern Brazilian Araucaria forests and evaluated their PS using Mantel regressions, phylogenetic eigenvector regressions (PVR) and K statistic. Mantel regressions always gave less significant results compared to PVR and K statistic in all combinations of phylogenetic trees constructed. Moreover, a better phylogenetic resolution affected PS, independently of the method used to estimate it. Morphological seed traits tended to show higher PS than diaspores traits, while PS in flowering/fruiting phenology depended mostly on the method used to estimate it. This study demonstrates that different PS estimates are obtained depending on the chosen method and the phylogenetic tree resolution. This finding has implications for inferences on phylogenetic niche conservatism or ecological processes determining phylogenetic community structure.

BackgroundWe evaluated the direct and indirect influence of climate, land use, phylogenetic structure, species richness and endemism on the distribution of New World threatened amphibians.Methodology/Principal FindingsWe used the WWF’s New World ecoregions, the WWFs amphibian distributional data and the IUCN Red List Categories to obtain the number of threatened species per ecoregion. We analyzed three different scenarios urgent, moderate, and the most inclusive scenario. Using path analysis we evaluated the direct and indirect effects of climate, type of land use, phylogenetic structure, richness and endemism on the number of threatened amphibians in New World ecoregions. In all scenarios we found strong support for direct influences of endemism, the cover of villages and species richness on the number of threatened species in each ecoregion. The proportion of wild area had indirect effects in the moderate and the most inclusive scenario. Phylogenetic composition was important in determining the species richness and endemism in each ecoregion. Climate variables had complex and indirect effects on the number of threatened species.Conclusion/SignificanceLand use has a more direct influence than climate in determining the distribution of New World threatened amphibians. Independently of the scenario analyzed, the main variables influencing the distribution of threatened amphibians were consistent, with endemism having the largest magnitude path coefficient. The importance of phylogenetic composition could indicate that some clades may be more threatened than others, and their presence increases the number of threatened species. Our results highlight the importance of man-made land transformation, which is a local variable, as a critical factor underlying the distribution of threatened amphibians at a biogeographic scale.

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Climbing plants are remarkable components of forests, highly contributing for the diversity and dynamics of communities. Studies focusing on climbing plants are scarce and for many vegetation types little is known about climbing species composition and their traits relevant for dispersal and establishment. The focus of this study is to provide the first floristic inventory of climbing plants in an Araucaria forest of Brazil, describing the dispersal syndromes and climbing mechanisms of species and comparing these traits and species composition patterns with other study sites in Southern Brazil. We found 104 taxa belonging to 33 families, with Asteraceae (22 spp.) and Apocynaceae (14 spp.) being the richest families. Among climbing mechanisms, stem twiner (50 spp.) is the most common, followed by tendril (20 spp.) and scrambler (12 spp.), while in relation to the dispersal syndromes, anemochoric species (65 spp.) are the most relevant followed by endozoochoric (28 spp.). Three new species registries were found for Rio Grande do Sul State expanding their occurrence range towards South Brazil. The comparison of climbers' survey sites showed two sharp groups in relation to species composition and traits proportion, Seasonal and Araucaria/Atlantic forest sites, but with no difference of traits frequency between sites. There is a predominance of stem twiners species in all sites, but the relative difference for tendril species increases in Araucaria and Atlantic forest sites. The Asteraceae and Apocynaceae families were the most relevant, contrasting to Seasonal forests of Southeast Brazil. Interesting patterns can be achieved with a more detailed classification of climbing mechanisms and the results found in this study contributes to enhance the knowledge on climbers' traits and diversity in South Brazil. Keywords: Lianas, Vines, Climbing mechanisms, Dispersal syndromes, Floristic of climbers. SEGER