Abstract:This work shows the modification of barbituric acid (BA) chemical shifts by dimethylsulphoxide (DMSO) molecules. The discussed changes are caused by creation of the H-bonded associates formed by barbituric acid with DMSO in solution. Free molecule of barbituric acid, the cluster of BA with two DMSO molecules and two different clusters of BA with four DMSO units are taken into consideration. The chemical shifts of these systems have been calculated and the obtained results have been compared with experimental data. Theoretical calculations predict a significant downfield shift for imino protons of barbituric acid involved in intermolecular -N-H...DMSO hydrogen bonds. The influence of the solvent molecules on other nuclei chemical shifts, especially protons of barbituric acid methylene group, is also reported. The calculations have involved Hartree-Fock and several Density Functional Theory methods. All methods correctly describe experimental 1 H and 13 C NMR spectra of barbituric acid. The best consistence between experiment and theory is observed for the BLYP functional. Four approximations of magnetic properties calculations embedded in the Gaussian'98 package have been tested. The results of the performed calculations indicate that from a practical point of view the GIAO method should be preferred.
Replacing oxygen by sulfur in a maltol molecule generates a family of new very interesting ligands: thiohydroxypyrones. In this work, theoretical calculations have been performed for all possible maltol derivatives created by consecutive substitutions of oxygen atoms by sulfur. The study is focused on molecular properties of thioligands, which are important for the formation of their metal complexes, and potentially useful in medicinal and environmental chemistry. Energetic, tautomeric, aromatic, and charge distribution data are reported and the results are compared with maltol properties. It is shown that, similar to maltol, the most stable tautomer for all thio derivatives, is the one with the keto-enol group. The protonation in cations occurs always on the heteroatom of the (thio)ketone group. The study has been carried out with the aid of some aromaticity indices, such as HOMA, NICS, and ASE. Aromaticity is studied in the heterocyclic pyran ring and in the XCCX part (where X -oxygen or sulfur). All calculations were performed at the B1LYP/6-311RRG(d,p) level of theory. We conclude that the aromaticity order determined previously for maltol (cation > neutral molecule > anion) is also preserved for thiohydroxopyrones. The results of the population analysis indicate that upon protonation, a large portion of additional positive charge delocalizes on the entire molecule, whereas upon deprotonation, negative charge accumulates mainly on the heteroatoms of the XCCX group.
We present the synthesis and structure determination for two thiohydantoin compounds (5-benzylidene-2sulfanylideneimidazolidin-4-one and 5-cinnamylidene-2-sulfanylideneimidazolidin-4-one), proposed as potential novel fungicides. The exact chemical structure of these molecules has not yet been determined since they can potentially exist in several tautomeric and geometric forms (Z-E isomerism). The geometries of all the theoretically possible structures of the studied compounds were optimised. The calculations were performed at the density functional theory level using the B3LYP functional and the 6-311++G** basis set. Based on our calculations, the most probable structures of the studied compounds were proposed. The theoretical predictions were verified by comparing the calculated IR as well as the 1 H and 13 C NMR spectra with the experimental data. It was documented that both the studied compounds exist predominantly in the tautomeric structure, in which the movable hydrogen is connected to the nitrogen atom in the hydantoin ring. It has been experimentally proven that one of the studied compounds occurs only as a single structure, whereas the other one exists as a mixture of two geometric isomers.
The treatment of parasitic infections requires the application of chemotherapy. In view of increasing resistance to currently in-use drugs, there is a constant need to search for new compounds with anthelmintic activity. A series of 16 cinnamylidene derivatives of rhodanine, including newly synthesized methoxy derivatives (1–11) and previously obtained chloro, nitro, and diethylamine derivatives (12–16), was investigated towards anthelmintic activity. Compounds (1–16) were evaluated against free-living nematodes of the genus Rhabditis sp. In the tested group of rhodanine derivatives, only compound 2 shows very high biological activity (LC50 = 0.93 µg/µL), which is higher than the reference drug albendazole (LC50 = 19.24 µg/µL). Crystal structures of two compounds, active 2 and inactive 4, were determined by the X-ray diffraction method to compare molecular geometry and search for differences responsible for observed biological activity/inactivity. Molecular modelling and selected physicochemical properties prediction were performed to assess the potential mechanism of action and applied in the search for an explanation as to why amongst all similar compounds only one is active. We can conclude that the tested compound 2 can be further investigated as a potential anthelmintic drug.
Complexation of alkyl derivatives of 5-ethyl-5-phenyl-2-thiobarbituric acid (2-thiophenobarbital) enantiomers by beta-cyclodextrin was investigated by the AM1 method. The inclusion complexes of beta-cyclodextrin with neutral and anionic forms of these enantiomers have been modeled and energetically optimized. The chiral discrimination of enantiomers was analyzed in terms of differences in the interaction energies. The calculated interaction energies between each enantiomer of the investigated 2-thiobarbiturates and beta-cyclodextrin confirm the ability of beta-cyclodextrin to act as a mobile phase additive in reversed-phase HPLC to separate enantiomers by liquid chromatography and rationalize their order of elution.
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