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The parA and parB genes of Pseudomonas aeruginosa are located approximately 8 kb anticlockwise from oriC. ParA is a cytosolic protein present at a level of around 600 molecules per cell in exponential phase, but the level drops about fivefold in stationary phase. Overproduction of full-length ParA or the N-terminal 85 amino acids severely inhibits growth of P. aeruginosa and P. putida. Both inactivation of parA and overexpression of parA in trans in P. aeruginosa also lead to accumulation of anucleate cells and changes in motility. Inactivation of parA also increases the turnover rate (degradation) of ParB. This may provide a mechanism for controlling the level of ParB in response to the growth rate and expression of the parAB operon.The ubiquitous superfamily of Walker-type ATPases is involved in many bacterial processes (7,34,45). One subfamily of these proteins, the ParA proteins, normally functions with a second protein, ParB, and in plasmid systems the combination of ParA and ParB has been associated with better-than-random segregation of low-copy-number plasmids (6,19,23). Although the plasmid partitioning systems fall into two groups on the basis of the ATPase type of component A (type I with Walker-type ATPase and type II with actin-like ATPase), the two groups seem to be unified in the general mechanism of plasmid pairing and directional separation of plasmid molecules prior to cell division. The ParB-like protein binds a centromere-like sequence and is proposed to form pairs of the plasmid molecules (12,17,30,54). The separation of replicons and their transfer towards opposite poles of the dividing cell correlate with the ability of the ParA-like protein to form a dynamic scaffold in the cells (1,3,11,41), its ATPase activity, and its ability to interact with the ParB-parS complex.Duplication of bacterial chromosomes is part of the cell cycle events leading to cell division. Data gathered during the last decade have revealed the role of many different proteins involved in replication and segregation, as well as the spatial and temporal sequence of these processes (4, 14). However, there are still many questions concerning the directional separation of chromosomes to the progeny cells and the regulation of this process. The discovery of highly conserved homologues of ParA (Walker-type ATPase) and ParB encoded by bacterial chromosomes in close vicinity to oriC (5, 18, 36, 44, 47) suggested a role for these proteins in chromosome segregation. To date, the potential roles of both the ParA and ParB proteins in cell biology have been related to regulatory cell cycle check points (8,16,37,44,48,49), positioning of oriC domains (38, 50), separation of replicated origins (37), and the translocation of the proteins to fixed cell locations (55, 61). Studies on chromosomal ParA and ParB also revealed a lack of uniformity in their action in different organisms despite the high degree of conservation at the levels of sequence and genetic organization (5,20,21,26,32,40,44,55,56,60).The aim of the work described in th...

IncU plasmids are a distinctive group of mobile elements with highly conserved backbone functions and variable antibiotic resistance gene cassettes. The IncU archetype is conjugative plasmid RA3, whose sequence (45,909 bp) shows it to be a mosaic, modular replicon with a class I integron different from that of other IncU replicons. Functional analysis demonstrated that RA3 possesses a broad host range and can efficiently self-transfer, replicate, and be maintained stably in alpha-, beta-, and gammaproteobacteria. RA3 contains 50 open reading frames clustered in distinct functional modules. The replication module encompasses the repA and repB genes embedded in long repetitive sequences. RepA, which is homologous to antitoxin proteins from alpha-and gammaproteobacteria, contains a Cro/cI-type DNA-binding domain present in the XRE family of transcriptional regulators. The repA promoter is repressed by RepA and RepB. The minireplicon encompasses repB and the downstream repetitive sequence r1/r2. RepB shows up to 80% similarity to putative replication initiation proteins from environmental plasmids of beta-and gammaproteobacteria, as well as similarity to replication proteins from alphaproteobacteria and Firmicutes. Stable maintenance functions of RA3 are most like those of IncP-1 broad-host-range plasmids and comprise the active partitioning apparatus formed by IncC (ParA) and KorB (ParB), the antirestriction protein KlcA, and accessory stability components KfrA and KfrC. The RA3 origin of transfer was localized experimentally between the maintenance and conjugative-transfer operons. The putative conjugative-transfer module is highly similar in organization and in its products to transfer regions of certain broad-host-range environmental plasmids.Conjugative plasmids contribute greatly to the global spread of genetic information and gene exchange, as in some cases they can self-transfer even between distant bacterial species. Conjugative R factors assigned to the IncU incompatibility group have been isolated from a number of Aeromonas spp. and Escherichia coli strains from seawater fish hatcheries and diseased fish, as well as from clinical environments (2,4,6,15,26,30,31,42). Members of the IncU plasmid group are implicated particularly in the dissemination of antibiotic resistance in Aeromonas strains associated with aquatic environments (15).IncU representatives pAr-32 and pRAS1 contain resistance genes encoded within integrons, and on the basis of restriction enzyme analysis of both plasmid molecules, Sørum et al. (35) postulated a highly conserved backbone structure of IncU group members with variability in the region coding for antibiotic resistance. Similar observations were made with plasmids pASOT and pFBAOT (2,26,27). Plasmid pFBAOT6 (84,749 bp) has been sequenced recently and analyzed in silico (27). Plasmid Rms149 of the Pseudomonas IncP-6 group was assigned to the IncU group on the basis of incompatibility tests (12). Apart from homology between the replication genes of pFBAOT6 and Rms149, no conservati...

Deletions leading to complete or partial removal of ParB were introduced into the Pseudomonas aeruginosa chromosome. Fluorescence microscopy of fixed cells showed that ParB mutants lacking the C-terminal domain or HTH motif formed multiple, less intense foci scattered irregularly, in contrast to the one to four ParB foci per cell symmetrically distributed in wild-type P. aeruginosa. All parB mutations affected both bacterial growth and swarming and swimming motilities, and increased the production of anucleate cells. Similar effects were observed after inactivation of parA of P. aeruginosa. As complete loss of ParA destabilized its partner ParB it was unclear deficiency of which protein is responsible for the mutant phenotypes. Analysis of four parB mutants showed that complete loss of ParB destabilized ParA whereas three mutants that retained the N-terminal 90 aa of ParB did not. As all four parB mutants demonstrate the same defects it can be concluded that either ParB, or ParA and ParB in combination, plays an important role in nucleoid distribution, growth and motility in P. aeruginosa.

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The kilB locus (which is unclonable in the absence of korB) of broad-host-range plasmid RK2 (60 kb) lies between the trfA operon (co-ordinates 16.4 to 18.2 kb), which encodes a protein essential for vegetative replication, and the Tra2 block of conjugative transfer genes (co-ordinates 20.0 to 27.0 kb). Promoter probe studies indicated that kilB is transcribed clockwise from a region containing closely spaced divergent promoters, one of which is the trfA promoter. The repression of both promoters by korB suggested that kilB may also play a role in stable maintenance of RK2. We have sequenced the region containing kilB and analysed it by deletion and insertion mutagenesis. Loss of the KilB+ phenotype does not result in decreased stability of mini RK2 plasmids. However insertion in ORFI (kilBI) of the region analysed results in a Tra- phenotype in plasmids which are otherwise competent for transfer, demonstrating that this locus is essential for transfer and is probably the first gene of the Tra2 region. From the kilBI DNA sequence KilBI is predicted to be 34995 Da, in line with M(r) = 36,000 observed by sodium dodecyl sulphate/polyacrylamide gel electrophoresis, and contains a type I ATP-binding motif. The purified product was used to raise antibody which allowed the level of KilBI produced from RK2 to be estimated at approximately 2000 molecules per bacterium. Protein sequence comparisons showed the highest homology score with VirB11, which is essential for the transfer of the Agrobacterium tumefaciens Ti plasmid DNA from bacteria to plant cells. The sequence similarity of both KilBI and VirB11 to a family of protein export functions suggested that KilBI may be involved in assembly of the surface-associated Tra functions. The data presented in this paper provide the first demonstration of coregulation of genes required for vegetative replication and conjugative transfer on a bacterial plasmid.

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While the essential role of episomal par loci in plasmid DNA partitioning has long been appreciated, the function of chromosomally encoded par loci is less clear. The chromosomal parA-parB genes are conserved throughout the bacterial kingdom and encode proteins homologous to those of the plasmidic Type I active partitioning systems. The third conserved element, the centromere-like sequence called parS, occurs in several copies in the chromosome. Recent studies show that the ParAParB-parS system is a key player of a mitosis-like apparatus ensuring proper intracellular localization of certain chromosomal regions such as oriC domain and their active and directed segregation. Moreover, the chromosomal par systems link chromosome segregation with initiation of DNA replication and the cell cycle. Suggested Reviewers:Opposed Reviewers:Dear Prof. Chattoraj, Please find enclosed the revised version of the review on ParABS chromosomal systems. The manuscript has been modified according to your suggestions. I removed the controversial "mitotic-like" term from the title and replaced it in the text by mitosis-like. I am hoping you will find this version f the review acceptable for publication. Yours sincerely. Grazyna Jagura-Burdzy Cover LetterThe manuscript has been already modified according to reviewers' suggestions in its previous revised version with the exception of "the mitotic-like" term (see below). The controversial "mitotic-like" term has been removed from the title and replaced it in the text by mitosis-like (when appropriate). Additional subtle changes have been introduced according to Editor-in-Chief suggestions. *Response to ReviewsThe review presents up-to-date evidence on the role chromosomally encoded ParAParB-parS systems play in the chromosome segregation in different bacterial species highlighting their function in linking chromosome segregation with initiation of DNA replication and the cell cycle.