A quantum chemical exploration is reported on the interaction potentials of H2O2 with the rare gases, He, Ne, Ar, Kr, and Xe. Hydrogen peroxide (the simplest example of chiral molecule in its equilibrium geometry) is modeled as rigid except for the torsional mode around the O-O bond. However, on the basis of previous work (Maciel, G. S.; et al. Chem. Phys. Lett. 2006 432, 383), the internal mode description is based, rather than on the vectors of the usual valence picture, on the orthogonal local representation, which was demonstrated useful for molecular dynamics simulations, because the torsion around the vector joining the center-of-mass of the two OH radicals mimics accurately the adiabatic reaction path for chirality changing isomerization, following the torsional potential energy profile from equilibrium through the barriers for the trans and cis geometries. The basic motivation of this work is the determination of potential energy surfaces for the interactions to be used in classical and quantum simulations of molecular collisions, specifically those leading to chirality changes of possible relevance in the modeling of prebiotic phenomena. Particular attention is devoted to the definition of coordinates and expansion formulas for the potentials, allowing for a faithful representation of geometrical and symmetry properties of these systems, prototypical of the interaction of an atom with a floppy molecule.
The structural and energetic properties of the H 2 S 2 molecule have been studied using density functional theory, second-order Møller-Plesset method, and coupled cluster theory with several basis sets. In order to extend previous work on intra-and intermolecular dynamics of the chirality changing modes for H 2 O 2 and its derivatives, our focus has been on the torsion around the S-S bond, along with an extensive characterization of the intermolecular potentials of H 2 S 2 with the rare gases ͑He, Ne, Ar, and Kr͒. Use is made of previously defined coordinates and expansion formulas for the potentials which allow for a faithful representation of geometrical and symmetry properties of these systems that involve the interaction of an atom with a floppy molecule. The potential energy surfaces obtained in this work are useful for classical and quantum mechanical simulations of molecular collisions responsible for chirality changing processes of possible interest in the modeling of prebiotic phenomena.
ABSTRACT:We present here a systematic study by quantum mechanical methods of structural and energetic properties for a series of substitutions by alkyl groups of the hydrogens in hydrogen peroxide. The emphasis is on the torsion around the peroxidic bond, which leads to the chirality changing stereomutation. The dihedral angle dependence of the geometrical features and of the dipole moment is discussed with reference to previous experimental and theoretical information, and with respect to the preceding paper on hydrogen peroxide (Maciel et al., Chem Phys Lett, 2006, 432, 383). This information is of interest for chiral separation experiments as well as in view of a possible dynamical mechanism for chirality exchange by molecular collisions. The cis and trans barriers appear to vary remarkably upon substitution by alkyl groups (methyl, ethyl, n-and iso-propyl, sec-and tert-butyl hydroperoxides), the most important property being their geometrical dimensions. As the latter increase, tendency for the equilibrium configuration towards the trans structure increases, so that the trans barrier becomes negligible for dimethyl and diethyl peroxides and for n-and iso-butyl hydroperoxides, giving essentially achiral molecules. For the chiral ones (HOOH, CH 3 OOH, and C 2 H 5 OOH) torsional level energies and eigenfunctions are calculated and their distribution as a function of temperature determined. Their use is exemplified by a calculation of the dipole moment of hydrogen peroxide at room temperature, reconciling previous disagreement between theory and experiment.
Extensive work in this laboratory has been devoted to the study of intermolecular interactions from scattering experiments, in order to provide ingredients for modelling forces acting in systems involving hydrocarbons, the components of atmospheres, and water. Our detection of aligned oxygen in gaseous streams and further evidence on simple molecules has been extended to benzene and various hydrocarbons. Chiral effects can be seen in the differential scattering of oriented molecules, in particular from surfaces. It is pointed out that it may be of pre-biotical interest that we focus on possible mechanisms for chiral bio-stereochemistry of oriented reactants, for example when flowing in atmospheres of rotating bodies, specifically the planet earth, as well as in vortex motions of celestial objects. Molecular dynamics simulations and experimental verifications are in progress.
Electronic structure calculations were carried out to study the various isomers of formula C(3)H(6)O, as a part of our current quantum chemical and dynamical approaches to intra- and intermolecular kinetics for the C(n)H(2n)O (n = 1, 2, 3) molecules. The usefulness of the GRRM (global reaction route mapping) program developed by Ohno and Maeda in predicting the structure of all isomers and of the transition states connecting them is fully exploited. All the isomers are identified as local minima on the MP2/CC-PVDZ potential energy surface. Acetone is the most stable isomer. In increasing order of stability the others are propanal, 2-propenol, 1-propenol, allyl alcohol, methyl vinyl ether, cyclopropanol, propylene oxide, and oxetane. Various isomerization paths connecting them are identified. All the transition states are fully characterized using intrinsic reaction coordinate calculations. The isomerization reactions may proceed through a single step or involve an intermediate species which is either a carbene or a diradical. Special attention is devoted to propylene oxide, a favorite molecule in current photochemical and stereodynamical studies because of its chiral nature. It is a rigid molecule, and chirality switching is found to be supported by its isomers. Two different chirality switching mechanisms which are assisted by propanal and allyl alcohol are presented.
In view of the particular attention recently devoted to hindered rotations, we have tested reduced kinetic energy operators to study the torsional mode around the O-O bond for H(2)O(2) and for a series of its derivatives (HOOCl, HOOCN, HOOF, HOONO, HOOMe, HOOEt, MeOOMe, ClOOCl, FOOCl, FOOF, and FOONO), for which we had previously determined potential energy profiles along the dihedral ROOR(') angle [R,R(')=H,F,Cl,CN,NO,Me (=CH(3)), Et (=C(2)H(5))]. We have calculated level distributions as a function of temperature and partition functions for all systems. Specifically, for the H(2)O(2) system we have used two procedures for the reduction in the kinetic energy operator to that of a rigid-rotor-like one and the calculated partition functions are compared with previous work. Quantum partition functions are evaluated both by quantum level state sums and by simple classical approximations. A semiclassical approach, using a linear approximation of the classical path and a quadratic Feynman-Hibbs approximation of Feynman path integral, introduced in previous work and here applied to the torsional mode, is shown to greatly improve the classical approximations. Further improvement is obtained by the explicit introduction of the dependence of the moment of inertia from the torsional angle. These results permit one to discuss the characteristic time for chirality changes for the investigated molecules either by quantum mechanical tunneling (dominating at low temperatures) or by transition state theory (expected to provide an estimate of racemization rates in the high energy limit).
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.