This review focuses on the monoterpene, sesquiterpene, and diterpene synthases of plant origin that use the corresponding C 10 , C 15 , and C 20 prenyl diphosphates as substrates to generate the enormous diversity of carbon skeletons characteristic of the terpenoid family of natural products. A description of the enzymology and mechanism of terpenoid cyclization is followed by a discussion of molecular cloning and heterologous expression of terpenoid synthases. Sequence relatedness and phylogenetic reconstruction, based on 33 members of the Tps gene family, are delineated, and comparison of important structural features of these enzymes is provided. The review concludes with an overview of the organization and regulation of terpenoid metabolism, and of the biotechnological applications of terpenoid synthase genes.The pathways of monoterpene, sesquiterpene, and diterpene biosynthesis are conveniently divided into several stages. The first encompasses the synthesis of isopentenyl diphosphate, isomerization to dimethylallyl diphosphate, prenyltransferase-catalyzed condensation of these two C 5 -units to geranyl diphosphate (GDP), and the subsequent 1Ј-4 additions of isopentenyl diphosphate to generate farnesyl (FDP) and geranylgeranyl (GGDP) diphosphate ( Fig. 1) (1). In the second stage, the prenyl diphosphates undergo a range of cyclizations based on variations on the same mechanistic theme to produce the parent skeletons of each class. Thus, GDP (C 10 ) gives rise to monoterpenes (2), FDP (C 15 ) to sesquiterpenes (3), and GGDP (C 20 ) to diterpenes (4). These transformations catalyzed by the terpenoid synthases (cyclases) may be followed by a variety of redox modifications of the parent skeletal types to produce the many thousands of different terpenoid metabolites of the essential oils, turpentines, and resins of plant origin (5).This review focuses on the synthases that use prenyl diphosphate substrates to generate the enormous diversity of carbon skeletons characteristic of terpenoids. Most of these natural products are cyclic, and many contain multiple ring systems, the basic structures of which are determined by the highly specific terpenoid synthases; examples of synthases that produce acyclic products are also known. The terpenoid synthases may be involved in the regulation of pathway flux because they operate at metabolic branch points and catalyze the first committed steps leading to the various terpene classes (6). The synthases responsible for generating the parent compounds of the various types are quite similar in properties (7), and all operate by electrophilic reaction mechanisms, as do the prenyltransferases (8, 9). Comprehensive treatment of the topic, especially enzymological and mechanistic aspects, has been provided recently (2-4), and the field is periodically surveyed (10, 11). After brief coverage of the three types of terpene synthases from higher plants, with emphasis on common features of structure and function, we focus here on molecular cloning and sequence analysis of these ...

The plant mitochondrial genome is retained in a multipartite structure that arises by a process of repeat-mediated homologous recombination. Low-frequency ectopic recombination also occurs, often producing sequence chimeras, aberrant ORFs, and novel subgenomic DNA molecules. This genomic plasticity may distinguish the plant mitochondrion from mammalian and fungal types. In plants, relative copy number of recombination-derived subgenomic DNA molecules within mitochondria is controlled by nuclear genes, and a genomic shifting process can result in their differential copy number suppression to nearly undetectable levels. We have cloned a nuclear gene that regulates mitochondrial substoichiometric shifting in Arabidopsis. The CHM gene was shown to encode a protein related to the MutS protein of Escherichia coli that is involved in mismatch repair and DNA recombination. We postulate that the process of substoichiometric shifting in plants may be a consequence of ectopic recombination suppression or replication stalling at ectopic recombination sites to effect molecule-specific copy number modulation.

Most eubacteria, and all eukaryotes examined thus far, encode homologs of the DNA mismatch repair protein MutS. Although eubacteria encode only one or two MutS-like proteins, eukaryotes encode at least six distinct MutS homolog (MSH) proteins, corresponding to conserved (orthologous) gene families. This suggests evolution of individual gene family lines of descent by several duplication/specialization events. Using quantitative phylogenetic analyses (RASA, or relative apparent synapomorphy analysis), we demonstrate that comparison of complete MutS protein sequences, rather than highly conserved C-terminal domains only, maximizes information about evolutionary relationships. We identify a novel, highly conserved middle domain, as well as clearly delineate an N-terminal domain, previously implicated in mismatch recognition, that shows family-specific patterns of aromatic and charged amino acids. Our final analysis, in contrast to previous analyses of MutS-like sequences, yields a stable phylogenetic tree consistent with the known biochemical functions of MutS/MSH proteins, that now assigns all known eukaryotic MSH proteins to a monophyletic group, whose branches correspond to the respective specialized gene families. The rooted phylogenetic tree suggests their derivation from a mitochondrial MSH1-like protein, itself the descendent of the MutS of a symbiont in a primitive eukaryotic precursor.

Angiosperms and algae possess two distinct glyceraldehyde-3-phosphate dehydrogenase (GAPDH) enzymes, an NAD(+)-dependent tetramer involved in cytosolic glycolysis and an NADP(+)-dependent enzyme of the Calvin cycle in chloroplasts. We have found that the gymnosperm Pinus sylvestris possesses, in addition to these, a nuclear-encoded, plastid-specific, NAD(+)-dependent GAPDH, designated GapCp, which has not previously been described from any plant. Several independent full-size cDNAs for this enzyme were isolated which encode a functional transit peptide and mature subunit very similar to that of cytosolic GAPDH of angiosperms and algae. A molecular phylogeny reveals that chloroplast GapCp and cytosolic GapC arose through gene duplication early in chlorophyte evolution. The GapCp gene is expressed as highly as that for GapC in light-grown pine seedlings. These findings suggest that aspects of compartmentalized sugar phosphate metabolism may differ in angiosperms and gymnosperms and furthermore underscore the contributions of endosymbiotic gene transfer and gene duplication to the nuclear complement of genes for enzymes of plant primary metabolism.