Soil organic carbon formation remains poorly understood despite its importance for human livelihoods. Uncertainties remain for the relative contributions of aboveground, root, and rhizodeposition inputs to particulate (POC) and mineral-associated (MAOC) organic carbon fractions. Combining a novel framework with isotope tracer studies, we quantified POC and MAOC formation efficiencies (% of C-inputs incorporated into each fraction). We found that rhizodeposition inputs have the highest MAOC formation efficiency (46%) as compared to roots (9%) or aboveground inputs (7%). In addition, rhizodeposition unexpectedly reduced POC formation, likely because it increased decomposition rates of new POC. Conversely, root biomass inputs have the highest POC formation efficiency (19%). Therefore, rhizodeposition and roots appear to play opposite but complementary roles for building MAOC and POC fractions.

Agroecology promises a third way between common global agriculture tradeoffs such as food production and nature conservation, environmental sustainability and ecosystem services. However, most successful examples of mainstreaming agroecology come from smallholder, family agriculture, that represents only about 30% of the world agricultural area. Mainstreaming agroecology among large scale farmers is urgently needed, but it requires addressing specific questions in research, technology and policy development to support sustainable transitions. Here we take stock of the existing knowledge on some key aspects necessary to support agroecological transitions in large scale farming, considering two contrasting starting points: highly subsidized and heavily taxed agricultural contexts, represented here by the examples of Western Europe and temperate South America. We summarize existing knowledge and gaps around service crops, arthropod-mediated functions, landscape and watershed regulation, graze-based livestock, nature-inclusive landscapes, and policy mechanisms to support transitions. We propose a research agenda for agroecology in large scale farming organized in five domains: (i) Breeding for diversity, (ii) Scalable complexity, (iii) Managing cycles beyond fields and farms, (iv) Sharing the cultivated landscape, and (v) Co-innovation with farmers, value chains and policy makers. Agroecology may result in a renewed impetus in large scale farming, to attract the youth, foster clean technological innovation, and to promote a new generation of large-scale farmers that take pride in contributing to feeding the world while serving the planet and its people.

Soil microbes are highly diverse and control most soil biogeochemical reactions. We examined how microbial functional genes and biogeochemical pools responded to the altered chemical inputs accompanying land use change. We examined paired native grasslands and adjacent Eucalyptus plantations (previously grassland) in Uruguay, a region that lacked forests before European settlement. Along with measurements of soil carbon, nitrogen, and bacterial diversity, we analyzed functional genes using the GeoChip 2.0 microarray, which simultaneously quantified several thousand genes involved in soil carbon and nitrogen cycling. Plantations and grassland differed significantly in functional gene profiles, bacterial diversity, and biogeochemical pool sizes. Most grassland profiles were similar, but plantation profiles generally differed from those of grasslands due to differences in functional gene abundance across diverse taxa. Eucalypts decreased ammonification and N fixation functional genes by 11% and 7.9% (P < 0.01), which correlated with decreased microbial biomass N and more NH 4 ؉ in plantation soils. Chitinase abundance decreased 7.8% in plantations compared to levels in grassland (P ‫؍‬ 0.017), and C polymer-degrading genes decreased by 1.5% overall (P < 0.05), which likely contributed to 54% (P < 0.05) more C in undecomposed extractable soil pools and 27% less microbial C (P < 0.01) in plantation soils. In general, afforestation altered the abundance of many microbial functional genes, corresponding with changes in soil biogeochemistry, in part through altered abundance of overall functional gene types rather than simply through changes in specific taxa. Such changes in microbial functional genes correspond with altered C and N storage and have implications for long-term productivity in these soils.

Carbon gains are a key aspect of ecosystem functioning since they represent the energy available for upper trophic levels. Carbon gains (or primary production) are strongly correlated with other ecosystem attributes such as secondary production and they are also the support for the provision of many ecosystem services. Given the documented dependency of primary production on precipitation, we expect that altered precipitation regimes, such as those projected by climate models, will have a significant impact on carbon gains. Land use and land cover changes are also expected to have a significant impact on the dynamics of carbon gains. We generated a spectral database of the fraction of photosynthetically active radiation intercepted by vegetation (fPAR), in order to study long‐term trends (i.e., decades) in carbon gains and its spatial and temporal relationships with precipitation and land cover patterns in Uruguay, which is part of the Rio de la Plata Grasslands, one of the largest temperate grasslands biome of the world. We found that carbon gains of native forests and grassland afforestation exhibited the strongest positive spatial response to precipitation, whereas crops and rangelands the weakest. In addition, we found that the temporal response of carbon gains to precipitation was strong and positive for all land uses. Although there were not clear trends in precipitation, we found strong negative trends in carbon gains through time, particularly in rangelands of the “Northern Campos” of Uruguay, where these trends represent a decrease between 10% and 25% of the annual aboveground net primary production. On the other hand, positive trends in carbon gains through time were associated to grassland afforestation and native forests. Therefore, during the period analyzed, land cover had a stronger influence on the observed trends in carbon gains than precipitation. These patterns emerged as a consequence of the interaction among precipitation, temperature, edaphic factors and management. Present trends in the controlling factors of C gains would exacerbate the observed patterns with serious consequences for the provision of ecosystems services.

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A�������. The Río de la Plata Grasslands (RPG) are one of the largest areas of open ecosystems (grasslands, shrublands and savannas) in the world. Historically, these systems have experienced, and continue to experience, an enormous loss of natural habitats. Moreover, their importance has been largely invisible in comparison to forested systems. The remaining area of open ecosystems in the RPG region varies according to the source from 38 to 58% of the original area. Open Ecosystems (OE) are a special case of agroecosystems because they can combine the supply of both provisioning and regulating and supporting ecosystem services (ES). Preserving the provision of ES in these natural habitats depends, in part, on understanding the role of the two main disturbances operating in them: grazing and fire. Although these two disturbances are natural components of OE, both are manipulated by humans. In this paper we reviewed the role played by fire and grazing in the structure and functioning of the RPG starting from the late Pleistocene and Holocene, and summarizing current evidence on the effects of fire and grazing on vegetation, fauna and biogeochemical processes. The evidence indicates that among agricultural activities, direct grazing systems in OE have the lowest environmental footprint. At the same time are the key for habitat preservation and ES supply. Overall, the OE of the RPG still represent a high proportion of the area, are capable of covering 2.5% of the world's population needs of high quality protein and, at the same time, guarding the regulation of key processes.

Toxic cyanobacterial blooms are globally increasing with negative effects on aquatic ecosystems, water use and human health. Blooms' main driving forces are eutrophication, dam construction, urban waste, replacement of natural vegetation with croplands and climate change and variability. The relative effects of each driver have not still been properly addressed, particularly in large river basins. Here, we performed a historical analysis of cyanobacterial abundance in a large and important ecosystem of South America (Uruguay river, ca 1900 km long, 365,000 km2 basin). We evaluated the interannual relationships between cyanobacterial abundance and land use change, river flow, urban sewage, temperature and precipitation from 1963 to the present. Our results indicated an exponential increase in cyanobacterial abundance during the last two decades, congruent with an increase in phosphorus concentration. A sharp shift in the cyanobacterial abundance rate of increase after the year 2000 was identified, resulting in abundance levels above public health alert since 2010. Path analyses showed a strong positive correlation between cyanobacteria and cropland area at the entire catchment level, while precipitation, temperature and water flow effects were negligible. Present results help to identify high nutrient input agricultural practices and nutrient enrichment as the main factors driving toxic bloom formation. These practices are already exerting severe effects on both aquatic ecosystems and human health and projections suggest these trends will be intensified in the future. To avoid further water degradation and health risk for future generations, a large‐scale (transboundary) change in agricultural management towards agroecological practices will be required.