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We present the simulation framework CRPropa version 3 designed for efficient development of astrophysical predictions for ultra-high energy particles. Users can assemble modules of the most relevant propagation effects in galactic and extragalactic space, include their own physics modules with new features, and receive on output primary and secondary cosmic messengers including nuclei, neutrinos and photons. In extension to the propagation physics contained in a previous CRPropa version, the new version facilitates high-performance computing and comprises new physical features such as an interface for galactic propagation using lensing techniques, an improved photonuclear interaction calculation, and propagation in time dependent environments to take into account cosmic evolution effects in anisotropy studies and variable sources. First applications using highlighted features are presented as well.Keywords: ultra high energy cosmic rays, magnetic fields, ultra high energy photons and neutrinos 1 Corresponding author.

Editor: S. DodelsonWe report a measurement of the flux of cosmic rays with unprecedented precision and statistics using the Pierre Auger Observatory. Based on fluorescence observations in coincidence with at least one surface detector we derive a spectrum for energies above 10 18 eV. We also update the previously published energy spectrum obtained with the surface detector array. The two spectra are combined addressing the systematic uncertainties and, in particular, the influence of the energy resolution on the spectral shape. 242Pierre Auger Collaboration / Physics Letters B 685 (2010) The spectrum can be described by a broken power law E −γ with index γ = 3.3 below the ankle which is measured at log 10 (E ankle /eV) = 18.6. Above the ankle the spectrum is described by a power law with index 2.6 followed by a flux suppression, above about log 10 (E/eV) = 19.5, detected with high statistical significance.

Applying our recently developed propagation code we review extragalactic neutrino fluxes above 10 14 eV in various scenarios and how they are constrained by current data. We specifically identify scenarios in which the cosmogenic neutrino flux above ≃ 10 18 eV, produced by pion production of ultra high energy cosmic rays outside their sources, is considerably higher than the "WaxmanBahcall bound". This is easy to achieve for sources with hard injection spectra and luminosities that were higher in the past. Such fluxes would significantly increase the chances to detect ultra-high energy neutrinos with experiments currently under construction or in the proposal stage.